Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 AC026310.3-201ENST00000625186 2373 ntBASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UBE2D4Q9Y2X8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 FAM99A-202ENST00000538190 1989 ntBASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
UBE2D4Q9Y2X8 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 AC010542.4-201ENST00000563151 1910 ntBASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 LINC01529-204ENST00000636474 1715 ntBASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
UBE2D4Q9Y2X8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
UBE2D4Q9Y2X8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC15.27■□□□□ 0.03
UBE2D4Q9Y2X8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
UBE2D4Q9Y2X8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 AC074183.2-201ENST00000623112 922 ntBASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 LINC01960-201ENST00000563759 1884 ntBASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
UBE2D4Q9Y2X8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 SNX5-217ENST00000606557 1087 ntBASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
UBE2D4Q9Y2X8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 FP325331.1-202ENST00000623531 1380 ntBASIC15.24■□□□□ 0.03
UBE2D4Q9Y2X8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 HSD17B1P1-201ENST00000590052 955 ntBASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 PVT1_1.1-201ENST00000615125 194 ntBASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
UBE2D4Q9Y2X8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
UBE2D4Q9Y2X8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
UBE2D4Q9Y2X8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
UBE2D4Q9Y2X8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms