Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
FOXA2Q9Y261 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
FOXA2Q9Y261 FP325331.1-202ENST00000623531 1380 ntBASIC17.76■□□□□ 0.43
FOXA2Q9Y261 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA2Q9Y261 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA2Q9Y261 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 AC087742.1-201ENST00000575880 1738 ntBASIC17.75■□□□□ 0.43
FOXA2Q9Y261 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA2Q9Y261 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA2Q9Y261 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA2Q9Y261 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 C11orf96-202ENST00000528572 1834 ntBASIC17.72■□□□□ 0.43
FOXA2Q9Y261 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.72■□□□□ 0.43
FOXA2Q9Y261 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 AC080038.3-201ENST00000623346 1952 ntBASIC17.72■□□□□ 0.43
FOXA2Q9Y261 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA2Q9Y261 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA2Q9Y261 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.71■□□□□ 0.42
FOXA2Q9Y261 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.7■□□□□ 0.42
FOXA2Q9Y261 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms