Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 AC087742.1-201ENST00000575880 1738 ntBASIC21.23■□□□□ 0.99
NDE1Q9NXR1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NDE1Q9NXR1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NDE1Q9NXR1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NDE1Q9NXR1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
NDE1Q9NXR1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.2■□□□□ 0.99
NDE1Q9NXR1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NDE1Q9NXR1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NDE1Q9NXR1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NDE1Q9NXR1 FAM99A-202ENST00000538190 1989 ntBASIC21.17■□□□□ 0.98
NDE1Q9NXR1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 AC005229.4-201ENST00000610085 2198 ntBASIC21.17■□□□□ 0.98
NDE1Q9NXR1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NDE1Q9NXR1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 MIR639-201ENST00000384974 98 ntBASIC21.16■□□□□ 0.98
NDE1Q9NXR1 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.16■□□□□ 0.98
NDE1Q9NXR1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms