Protein–RNA interactions for Protein: Q96L12

CALR3, Calreticulin-3, humanhuman

Known RBP Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CALR3Q96L12 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
CALR3Q96L12 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CALR3Q96L12 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.24■■□□□ 1.31
CALR3Q96L12 Z92544.1-202ENST00000571933 1220 ntBASIC23.24■■□□□ 1.31
CALR3Q96L12 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CALR3Q96L12 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.24■■□□□ 1.31
CALR3Q96L12 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.24■■□□□ 1.31
CALR3Q96L12 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.24■■□□□ 1.31
CALR3Q96L12 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.24■■□□□ 1.31
CALR3Q96L12 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.23■■□□□ 1.31
CALR3Q96L12 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CALR3Q96L12 AC092028.1-203ENST00000608262 953 ntBASIC23.23■■□□□ 1.31
CALR3Q96L12 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CALR3Q96L12 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CALR3Q96L12 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CALR3Q96L12 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CALR3Q96L12 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.22■■□□□ 1.31
CALR3Q96L12 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.22■■□□□ 1.31
CALR3Q96L12 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CALR3Q96L12 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
CALR3Q96L12 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CALR3Q96L12 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.21■■□□□ 1.31
CALR3Q96L12 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CALR3Q96L12 CA15P2-201ENST00000611168 834 ntBASIC23.21■■□□□ 1.31
CALR3Q96L12 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.21■■□□□ 1.31
CALR3Q96L12 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
CALR3Q96L12 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CALR3Q96L12 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CALR3Q96L12 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CALR3Q96L12 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.2■■□□□ 1.3
CALR3Q96L12 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
CALR3Q96L12 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.2■■□□□ 1.3
CALR3Q96L12 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CALR3Q96L12 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.2■■□□□ 1.3
CALR3Q96L12 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CALR3Q96L12 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.19■■□□□ 1.3
CALR3Q96L12 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.19■■□□□ 1.3
CALR3Q96L12 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
CALR3Q96L12 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.19■■□□□ 1.3
CALR3Q96L12 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.19■■□□□ 1.3
CALR3Q96L12 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.19■■□□□ 1.3
CALR3Q96L12 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CALR3Q96L12 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.19■■□□□ 1.3
CALR3Q96L12 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.18■■□□□ 1.3
CALR3Q96L12 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CALR3Q96L12 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 KRT125P-201ENST00000546827 989 ntBASIC23.18■■□□□ 1.3
CALR3Q96L12 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 AC009102.2-201ENST00000606772 1639 ntBASIC23.18■■□□□ 1.3
CALR3Q96L12 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CALR3Q96L12 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CALR3Q96L12 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CALR3Q96L12 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.17■■□□□ 1.3
CALR3Q96L12 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CALR3Q96L12 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CALR3Q96L12 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CALR3Q96L12 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.17■■□□□ 1.3
CALR3Q96L12 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CALR3Q96L12 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CALR3Q96L12 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.16■■□□□ 1.3
CALR3Q96L12 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.16■■□□□ 1.3
CALR3Q96L12 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CALR3Q96L12 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.16■■□□□ 1.3
CALR3Q96L12 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CALR3Q96L12 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CALR3Q96L12 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms