Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 LINC01529-204ENST00000636474 1715 ntBASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 RNF165-205ENST00000588679 2904 ntBASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLIP4Q8N3C7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 AL121603.2-201ENST00000557373 2117 ntBASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.47■□□□□ 0.87
CLIP4Q8N3C7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 FP325331.1-202ENST00000623531 1380 ntBASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 AC009102.2-201ENST00000606772 1639 ntBASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLIP4Q8N3C7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 ESRRAP2-201ENST00000418437 1549 ntBASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLIP4Q8N3C7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLIP4Q8N3C7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 UNC93B8-201ENST00000511903 705 ntBASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLIP4Q8N3C7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.42■□□□□ 0.86
CLIP4Q8N3C7 ECEL1P1-201ENST00000373592 1742 ntBASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms