Protein–RNA interactions for Protein: Q8IYJ1

CPNE9, Copine-9, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9Q8IYJ1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 AC087742.1-201ENST00000575880 1738 ntBASIC21.72■■□□□ 1.07
CPNE9Q8IYJ1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 AL499627.2-201ENST00000606283 725 ntBASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPNE9Q8IYJ1 EP400NL-214ENST00000641289 2402 ntBASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE9Q8IYJ1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 SRD5A1P1-201ENST00000442297 786 ntBASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 AC127496.7-201ENST00000625110 1798 ntBASIC21.69■■□□□ 1.06
CPNE9Q8IYJ1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 MIR4466-201ENST00000606121 54 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 pRNA.6-201ENST00000610482 90 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 pRNA.5-201ENST00000612139 90 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 pRNA.11-201ENST00000618423 90 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 pRNA.13-201ENST00000619112 90 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 LINC01960-201ENST00000563759 1884 ntBASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE9Q8IYJ1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE9Q8IYJ1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 AC131281.2-201ENST00000520478 145 ntBASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CPNE9Q8IYJ1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms