Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 AC105265.2-201ENST00000467189 838 ntBASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
C9orf40Q8IXQ3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
C9orf40Q8IXQ3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 AP005435.1-201ENST00000529293 1178 ntBASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
C9orf40Q8IXQ3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 LINC01960-201ENST00000563759 1884 ntBASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 IGHV3-19-201ENST00000521488 291 ntBASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.33■□□□□ 0.85
C9orf40Q8IXQ3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
C9orf40Q8IXQ3 TSPY26P-201ENST00000476365 1326 ntBASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 ZNRF2P3-201ENST00000424200 374 ntBASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
C9orf40Q8IXQ3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.31■□□□□ 0.84
C9orf40Q8IXQ3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 AC068587.7-201ENST00000641602 218 ntBASIC20.3■□□□□ 0.84
C9orf40Q8IXQ3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
C9orf40Q8IXQ3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms