Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC00526-201ENST00000581067 1875 ntBASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 GUSBP5-202ENST00000510805 1989 ntBASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 AC097381.1-201ENST00000429019 1296 ntBASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM3Q53GG5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 EP400NL-214ENST00000641289 2402 ntBASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM3Q53GG5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 ESRRAP2-201ENST00000418437 1549 ntBASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
PDLIM3Q53GG5 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 AL031432.3-201ENST00000607698 485 ntBASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.08■□□□□ 0.48
PDLIM3Q53GG5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 AC105265.2-201ENST00000467189 838 ntBASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 AL512631.2-201ENST00000604634 923 ntBASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PDLIM3Q53GG5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 MTDHP2-201ENST00000601468 714 ntBASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PDLIM3Q53GG5 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 AC087623.3-201ENST00000607047 1098 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms