Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LRRK1Q38SD2 AL358852.1-201ENST00000623174 1268 ntBASIC21.87■■□□□ 1.09
LRRK1Q38SD2 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LRRK1Q38SD2 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LRRK1Q38SD2 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 MIR6821-201ENST00000617625 74 ntBASIC21.85■■□□□ 1.09
LRRK1Q38SD2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
LRRK1Q38SD2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 KRT18P14-201ENST00000534205 1250 ntBASIC21.84■■□□□ 1.09
LRRK1Q38SD2 AL354811.1-201ENST00000610286 706 ntBASIC21.84■■□□□ 1.09
LRRK1Q38SD2 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
LRRK1Q38SD2 AC068587.7-201ENST00000641602 218 ntBASIC21.84■■□□□ 1.09
LRRK1Q38SD2 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L2-201ENST00000561772 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 TPRG1LP1-201ENST00000598702 760 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L6-201ENST00000626483 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L1-201ENST00000627662 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L8-201ENST00000629013 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L3-201ENST00000630187 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L7-201ENST00000630678 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 DUX4L5-201ENST00000630834 1275 ntBASIC21.83■■□□□ 1.09
LRRK1Q38SD2 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
LRRK1Q38SD2 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
LRRK1Q38SD2 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.82■■□□□ 1.08
LRRK1Q38SD2 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 MIR6084-201ENST00000622012 110 ntBASIC21.81■■□□□ 1.08
LRRK1Q38SD2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
LRRK1Q38SD2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LRRK1Q38SD2 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.79■■□□□ 1.08
LRRK1Q38SD2 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms