Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF4P78317 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF4P78317 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
RNF4P78317 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF4P78317 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
RNF4P78317 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF4P78317 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF4P78317 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.36■□□□□ 0.85
RNF4P78317 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.36■□□□□ 0.85
RNF4P78317 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.36■□□□□ 0.85
RNF4P78317 IGHV3-19-201ENST00000521488 291 ntBASIC20.36■□□□□ 0.85
RNF4P78317 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF4P78317 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF4P78317 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF4P78317 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF4P78317 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF4P78317 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF4P78317 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF4P78317 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
RNF4P78317 TSPY26P-201ENST00000476365 1326 ntBASIC20.35■□□□□ 0.85
RNF4P78317 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF4P78317 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.35■□□□□ 0.85
RNF4P78317 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF4P78317 AC068587.7-201ENST00000641602 218 ntBASIC20.35■□□□□ 0.85
RNF4P78317 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF4P78317 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.35■□□□□ 0.85
RNF4P78317 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF4P78317 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RNF4P78317 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF4P78317 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF4P78317 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF4P78317 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.34■□□□□ 0.85
RNF4P78317 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 AL031602.1-201ENST00000633169 911 ntBASIC20.34■□□□□ 0.85
RNF4P78317 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.34■□□□□ 0.85
RNF4P78317 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF4P78317 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RNF4P78317 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.33■□□□□ 0.85
RNF4P78317 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF4P78317 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RNF4P78317 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF4P78317 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.33■□□□□ 0.85
RNF4P78317 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.33■□□□□ 0.85
RNF4P78317 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF4P78317 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RNF4P78317 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.33■□□□□ 0.84
RNF4P78317 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
RNF4P78317 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.32■□□□□ 0.84
RNF4P78317 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.32■□□□□ 0.84
RNF4P78317 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.32■□□□□ 0.84
RNF4P78317 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF4P78317 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.31■□□□□ 0.84
RNF4P78317 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RNF4P78317 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RNF4P78317 IRS3P-201ENST00000223076 1006 ntBASIC20.31■□□□□ 0.84
RNF4P78317 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.31■□□□□ 0.84
RNF4P78317 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RNF4P78317 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
RNF4P78317 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RNF4P78317 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RNF4P78317 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
RNF4P78317 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.3■□□□□ 0.84
RNF4P78317 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.3■□□□□ 0.84
RNF4P78317 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.3■□□□□ 0.84
RNF4P78317 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF4P78317 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF4P78317 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF4P78317 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
RNF4P78317 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
RNF4P78317 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF4P78317 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RNF4P78317 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RNF4P78317 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF4P78317 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF4P78317 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
RNF4P78317 AC087239.1-201ENST00000622671 572 ntBASIC20.29■□□□□ 0.84
RNF4P78317 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF4P78317 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RNF4P78317 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF4P78317 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms