Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.47■■□□□ 1.03
YBX1P67809 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 UNC93B3-201ENST00000308076 687 ntBASIC21.47■■□□□ 1.03
YBX1P67809 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.47■■□□□ 1.03
YBX1P67809 AC110285.6-201ENST00000617652 491 ntBASIC21.47■■□□□ 1.03
YBX1P67809 AC241377.3-202ENST00000626088 1088 ntBASIC21.47■■□□□ 1.03
YBX1P67809 AC241585.3-202ENST00000628937 1088 ntBASIC21.47■■□□□ 1.03
YBX1P67809 AC245100.8-202ENST00000629247 1058 ntBASIC21.47■■□□□ 1.03
YBX1P67809 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.47■■□□□ 1.03
YBX1P67809 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.47■■□□□ 1.03
YBX1P67809 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
YBX1P67809 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
YBX1P67809 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
YBX1P67809 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.46■■□□□ 1.03
YBX1P67809 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.46■■□□□ 1.03
YBX1P67809 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 MIR3181-201ENST00000578512 73 ntBASIC21.46■■□□□ 1.03
YBX1P67809 pRNA.6-201ENST00000610482 90 ntBASIC21.46■■□□□ 1.03
YBX1P67809 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
YBX1P67809 pRNA.5-201ENST00000612139 90 ntBASIC21.46■■□□□ 1.03
YBX1P67809 pRNA.11-201ENST00000618423 90 ntBASIC21.46■■□□□ 1.03
YBX1P67809 pRNA.13-201ENST00000619112 90 ntBASIC21.46■■□□□ 1.03
YBX1P67809 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.46■■□□□ 1.03
YBX1P67809 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
YBX1P67809 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.46■■□□□ 1.03
YBX1P67809 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
YBX1P67809 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.46■■□□□ 1.03
YBX1P67809 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
YBX1P67809 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
YBX1P67809 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.45■■□□□ 1.02
YBX1P67809 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
YBX1P67809 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.45■■□□□ 1.02
YBX1P67809 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.45■■□□□ 1.02
YBX1P67809 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 AC007375.3-201ENST00000600936 2314 ntBASIC21.45■■□□□ 1.02
YBX1P67809 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
YBX1P67809 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
YBX1P67809 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
YBX1P67809 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 SYT6-210ENST00000641643 1587 ntBASIC21.44■■□□□ 1.02
YBX1P67809 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
YBX1P67809 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
YBX1P67809 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.43■■□□□ 1.02
YBX1P67809 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
YBX1P67809 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.43■■□□□ 1.02
YBX1P67809 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
YBX1P67809 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.43■■□□□ 1.02
YBX1P67809 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.43■■□□□ 1.02
YBX1P67809 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
YBX1P67809 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.43■■□□□ 1.02
YBX1P67809 ECEL1P1-201ENST00000373592 1742 ntBASIC21.43■■□□□ 1.02
YBX1P67809 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
YBX1P67809 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
YBX1P67809 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.43■■□□□ 1.02
YBX1P67809 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.43■■□□□ 1.02
YBX1P67809 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.42■■□□□ 1.02
YBX1P67809 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.42■■□□□ 1.02
YBX1P67809 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
YBX1P67809 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.42■■□□□ 1.02
YBX1P67809 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
YBX1P67809 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
YBX1P67809 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.41■■□□□ 1.02
YBX1P67809 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
YBX1P67809 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
YBX1P67809 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.41■■□□□ 1.02
YBX1P67809 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.41■■□□□ 1.02
YBX1P67809 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.41■■□□□ 1.02
YBX1P67809 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.41■■□□□ 1.02
YBX1P67809 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.41■■□□□ 1.02
YBX1P67809 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 AC024257.2-201ENST00000549699 147 ntBASIC21.41■■□□□ 1.02
YBX1P67809 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
YBX1P67809 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.41■■□□□ 1.02
YBX1P67809 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.41■■□□□ 1.02
YBX1P67809 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms