Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CX3CR1P49238 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.27■□□□□ 0.68
CX3CR1P49238 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
CX3CR1P49238 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CX3CR1P49238 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CX3CR1P49238 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
CX3CR1P49238 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.26■□□□□ 0.67
CX3CR1P49238 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CX3CR1P49238 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CX3CR1P49238 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.26■□□□□ 0.67
CX3CR1P49238 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CX3CR1P49238 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CR1P49238 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CX3CR1P49238 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
CX3CR1P49238 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CX3CR1P49238 AC087742.1-201ENST00000575880 1738 ntBASIC19.25■□□□□ 0.67
CX3CR1P49238 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CR1P49238 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.24■□□□□ 0.67
CX3CR1P49238 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.24■□□□□ 0.67
CX3CR1P49238 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.24■□□□□ 0.67
CX3CR1P49238 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CX3CR1P49238 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.24■□□□□ 0.67
CX3CR1P49238 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.24■□□□□ 0.67
CX3CR1P49238 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CX3CR1P49238 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CR1P49238 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 AC004687.1-201ENST00000579003 1625 ntBASIC19.23■□□□□ 0.67
CX3CR1P49238 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.23■□□□□ 0.67
CX3CR1P49238 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.23■□□□□ 0.67
CX3CR1P49238 AL117332.1-201ENST00000622628 974 ntBASIC19.23■□□□□ 0.67
CX3CR1P49238 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CX3CR1P49238 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CR1P49238 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CR1P49238 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CR1P49238 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CR1P49238 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CR1P49238 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.22■□□□□ 0.67
CX3CR1P49238 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.22■□□□□ 0.67
CX3CR1P49238 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.22■□□□□ 0.67
CX3CR1P49238 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CR1P49238 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 LINC01960-201ENST00000563759 1884 ntBASIC19.22■□□□□ 0.67
CX3CR1P49238 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CX3CR1P49238 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.21■□□□□ 0.67
CX3CR1P49238 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CX3CR1P49238 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.21■□□□□ 0.67
CX3CR1P49238 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CX3CR1P49238 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.21■□□□□ 0.67
CX3CR1P49238 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.21■□□□□ 0.67
CX3CR1P49238 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.21■□□□□ 0.67
CX3CR1P49238 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CR1P49238 AC080038.3-201ENST00000623346 1952 ntBASIC19.21■□□□□ 0.67
CX3CR1P49238 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.2■□□□□ 0.66
CX3CR1P49238 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CX3CR1P49238 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CX3CR1P49238 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.2■□□□□ 0.66
CX3CR1P49238 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CX3CR1P49238 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CR1P49238 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms