Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.23■■□□□ 1.31
BDNFP23560 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BDNFP23560 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
BDNFP23560 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
BDNFP23560 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
BDNFP23560 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BDNFP23560 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BDNFP23560 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BDNFP23560 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.22■■□□□ 1.31
BDNFP23560 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BDNFP23560 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.22■■□□□ 1.31
BDNFP23560 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.22■■□□□ 1.31
BDNFP23560 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.22■■□□□ 1.31
BDNFP23560 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.22■■□□□ 1.31
BDNFP23560 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BDNFP23560 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.22■■□□□ 1.31
BDNFP23560 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.21■■□□□ 1.31
BDNFP23560 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.21■■□□□ 1.31
BDNFP23560 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.21■■□□□ 1.31
BDNFP23560 AL031602.1-201ENST00000633169 911 ntBASIC23.21■■□□□ 1.31
BDNFP23560 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.21■■□□□ 1.31
BDNFP23560 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.21■■□□□ 1.31
BDNFP23560 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.21■■□□□ 1.31
BDNFP23560 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BDNFP23560 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.2■■□□□ 1.3
BDNFP23560 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.2■■□□□ 1.3
BDNFP23560 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.2■■□□□ 1.3
BDNFP23560 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BDNFP23560 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.2■■□□□ 1.3
BDNFP23560 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.2■■□□□ 1.3
BDNFP23560 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
BDNFP23560 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
BDNFP23560 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
BDNFP23560 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BDNFP23560 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BDNFP23560 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.19■■□□□ 1.3
BDNFP23560 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.19■■□□□ 1.3
BDNFP23560 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BDNFP23560 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.19■■□□□ 1.3
BDNFP23560 AC097381.1-201ENST00000429019 1296 ntBASIC23.19■■□□□ 1.3
BDNFP23560 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.19■■□□□ 1.3
BDNFP23560 MIR6821-201ENST00000617625 74 ntBASIC23.19■■□□□ 1.3
BDNFP23560 AC068587.7-201ENST00000641602 218 ntBASIC23.19■■□□□ 1.3
BDNFP23560 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.19■■□□□ 1.3
BDNFP23560 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.19■■□□□ 1.3
BDNFP23560 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
BDNFP23560 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.18■■□□□ 1.3
BDNFP23560 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
BDNFP23560 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.18■■□□□ 1.3
BDNFP23560 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
BDNFP23560 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.18■■□□□ 1.3
BDNFP23560 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.18■■□□□ 1.3
BDNFP23560 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
BDNFP23560 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BDNFP23560 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.18■■□□□ 1.3
BDNFP23560 AC012414.1-201ENST00000556676 535 ntBASIC23.18■■□□□ 1.3
BDNFP23560 MIR6084-201ENST00000622012 110 ntBASIC23.18■■□□□ 1.3
BDNFP23560 AL358852.1-201ENST00000623174 1268 ntBASIC23.18■■□□□ 1.3
BDNFP23560 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
BDNFP23560 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BDNFP23560 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
BDNFP23560 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.18■■□□□ 1.3
BDNFP23560 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
BDNFP23560 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.17■■□□□ 1.3
BDNFP23560 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
BDNFP23560 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.17■■□□□ 1.3
BDNFP23560 AC087623.3-201ENST00000607047 1098 ntBASIC23.17■■□□□ 1.3
BDNFP23560 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
BDNFP23560 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.16■■□□□ 1.3
BDNFP23560 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
BDNFP23560 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
BDNFP23560 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
BDNFP23560 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BDNFP23560 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.16■■□□□ 1.3
BDNFP23560 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.16■■□□□ 1.3
BDNFP23560 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.16■■□□□ 1.3
BDNFP23560 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.16■■□□□ 1.3
BDNFP23560 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.16■■□□□ 1.3
BDNFP23560 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.16■■□□□ 1.3
BDNFP23560 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
BDNFP23560 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.16■■□□□ 1.3
BDNFP23560 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BDNFP23560 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
BDNFP23560 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
BDNFP23560 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
BDNFP23560 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms