Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TNFP01375 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.56■■□□□ 1.04
TNFP01375 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
TNFP01375 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.56■■□□□ 1.04
TNFP01375 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.56■■□□□ 1.04
TNFP01375 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TNFP01375 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.56■■□□□ 1.04
TNFP01375 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TNFP01375 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
TNFP01375 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.55■■□□□ 1.04
TNFP01375 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 DUX4L2-201ENST00000561772 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
TNFP01375 DUX4L6-201ENST00000626483 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4L1-201ENST00000627662 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4L8-201ENST00000629013 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4L3-201ENST00000630187 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4L7-201ENST00000630678 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 DUX4L5-201ENST00000630834 1275 ntBASIC21.55■■□□□ 1.04
TNFP01375 LINC02228-203ENST00000641970 1355 ntBASIC21.55■■□□□ 1.04
TNFP01375 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TNFP01375 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.55■■□□□ 1.04
TNFP01375 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TNFP01375 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.54■■□□□ 1.04
TNFP01375 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.54■■□□□ 1.04
TNFP01375 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.54■■□□□ 1.04
TNFP01375 CCDC92B-201ENST00000575506 885 ntBASIC21.54■■□□□ 1.04
TNFP01375 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
TNFP01375 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
TNFP01375 AC092068.2-201ENST00000590491 1708 ntBASIC21.54■■□□□ 1.04
TNFP01375 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TNFP01375 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.54■■□□□ 1.04
TNFP01375 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.54■■□□□ 1.04
TNFP01375 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.54■■□□□ 1.04
TNFP01375 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
TNFP01375 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFP01375 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.53■■□□□ 1.04
TNFP01375 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
TNFP01375 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.53■■□□□ 1.04
TNFP01375 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.53■■□□□ 1.04
TNFP01375 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFP01375 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFP01375 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.53■■□□□ 1.04
TNFP01375 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.53■■□□□ 1.04
TNFP01375 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TNFP01375 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.52■■□□□ 1.04
TNFP01375 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TNFP01375 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.52■■□□□ 1.04
TNFP01375 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
TNFP01375 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
TNFP01375 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
TNFP01375 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TNFP01375 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
TNFP01375 KRT18P5-201ENST00000436075 1291 ntBASIC21.52■■□□□ 1.04
TNFP01375 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.52■■□□□ 1.04
TNFP01375 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.52■■□□□ 1.04
TNFP01375 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TNFP01375 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.52■■□□□ 1.04
TNFP01375 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TNFP01375 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
TNFP01375 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
TNFP01375 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TNFP01375 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
TNFP01375 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TNFP01375 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TNFP01375 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TNFP01375 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TNFP01375 KRT18P14-201ENST00000534205 1250 ntBASIC21.51■■□□□ 1.03
TNFP01375 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TNFP01375 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TNFP01375 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFP01375 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.5■■□□□ 1.03
TNFP01375 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFP01375 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFP01375 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
TNFP01375 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.5■■□□□ 1.03
TNFP01375 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.5■■□□□ 1.03
TNFP01375 TERF1P2-201ENST00000583350 1212 ntBASIC21.5■■□□□ 1.03
TNFP01375 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.5■■□□□ 1.03
TNFP01375 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TNFP01375 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms