Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.11■□□□□ 0.97
LDLRP01130 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.11■□□□□ 0.97
LDLRP01130 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDLRP01130 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.11■□□□□ 0.97
LDLRP01130 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.11■□□□□ 0.97
LDLRP01130 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.11■□□□□ 0.97
LDLRP01130 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.11■□□□□ 0.97
LDLRP01130 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
LDLRP01130 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.1■□□□□ 0.97
LDLRP01130 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.1■□□□□ 0.97
LDLRP01130 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.1■□□□□ 0.97
LDLRP01130 AC090877.2-201ENST00000558441 1738 ntBASIC21.1■□□□□ 0.97
LDLRP01130 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.1■□□□□ 0.97
LDLRP01130 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.1■□□□□ 0.97
LDLRP01130 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.1■□□□□ 0.97
LDLRP01130 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.1■□□□□ 0.97
LDLRP01130 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDLRP01130 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
LDLRP01130 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.09■□□□□ 0.97
LDLRP01130 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.09■□□□□ 0.97
LDLRP01130 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LDLRP01130 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDLRP01130 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.09■□□□□ 0.97
LDLRP01130 SUDS3P1-201ENST00000505831 966 ntBASIC21.09■□□□□ 0.97
LDLRP01130 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.09■□□□□ 0.97
LDLRP01130 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.09■□□□□ 0.97
LDLRP01130 AL031432.3-201ENST00000607698 485 ntBASIC21.09■□□□□ 0.97
LDLRP01130 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDLRP01130 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LDLRP01130 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
LDLRP01130 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
LDLRP01130 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDLRP01130 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDLRP01130 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDLRP01130 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDLRP01130 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
LDLRP01130 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.08■□□□□ 0.96
LDLRP01130 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDLRP01130 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.07■□□□□ 0.96
LDLRP01130 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.07■□□□□ 0.96
LDLRP01130 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.07■□□□□ 0.96
LDLRP01130 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LDLRP01130 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.07■□□□□ 0.96
LDLRP01130 AC011551.1-201ENST00000614101 683 ntBASIC21.07■□□□□ 0.96
LDLRP01130 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.07■□□□□ 0.96
LDLRP01130 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LDLRP01130 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
LDLRP01130 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
LDLRP01130 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
LDLRP01130 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
LDLRP01130 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.06■□□□□ 0.96
LDLRP01130 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.06■□□□□ 0.96
LDLRP01130 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.06■□□□□ 0.96
LDLRP01130 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LDLRP01130 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDLRP01130 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDLRP01130 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.05■□□□□ 0.96
LDLRP01130 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.05■□□□□ 0.96
LDLRP01130 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDLRP01130 UNC93B3-201ENST00000308076 687 ntBASIC21.05■□□□□ 0.96
LDLRP01130 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
LDLRP01130 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
LDLRP01130 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDLRP01130 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
LDLRP01130 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LDLRP01130 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.05■□□□□ 0.96
LDLRP01130 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LDLRP01130 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDLRP01130 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.04■□□□□ 0.96
LDLRP01130 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms