Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SIX3O95343 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SIX3O95343 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SIX3O95343 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SIX3O95343 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.5■■□□□ 1.03
SIX3O95343 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.5■■□□□ 1.03
SIX3O95343 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SIX3O95343 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX3O95343 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SIX3O95343 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.5■■□□□ 1.03
SIX3O95343 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX3O95343 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SIX3O95343 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.49■■□□□ 1.03
SIX3O95343 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX3O95343 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
SIX3O95343 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SIX3O95343 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SIX3O95343 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.48■■□□□ 1.03
SIX3O95343 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SIX3O95343 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX3O95343 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.47■■□□□ 1.03
SIX3O95343 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX3O95343 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX3O95343 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.47■■□□□ 1.03
SIX3O95343 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX3O95343 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
SIX3O95343 C11orf96-202ENST00000528572 1834 ntBASIC21.47■■□□□ 1.03
SIX3O95343 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SIX3O95343 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
SIX3O95343 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.46■■□□□ 1.03
SIX3O95343 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SIX3O95343 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.46■■□□□ 1.03
SIX3O95343 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.46■■□□□ 1.03
SIX3O95343 MIR6724-1-201ENST00000616420 92 ntBASIC21.46■■□□□ 1.03
SIX3O95343 MIR6724-2-201ENST00000616483 92 ntBASIC21.46■■□□□ 1.03
SIX3O95343 MIR6724-4-201ENST00000617390 92 ntBASIC21.46■■□□□ 1.03
SIX3O95343 MIR6724-3-201ENST00000622482 92 ntBASIC21.46■■□□□ 1.03
SIX3O95343 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SIX3O95343 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SIX3O95343 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
SIX3O95343 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX3O95343 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX3O95343 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX3O95343 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.45■■□□□ 1.02
SIX3O95343 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.45■■□□□ 1.02
SIX3O95343 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SIX3O95343 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.45■■□□□ 1.02
SIX3O95343 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.44■■□□□ 1.02
SIX3O95343 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.44■■□□□ 1.02
SIX3O95343 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
SIX3O95343 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
SIX3O95343 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 AC137767.1-201ENST00000602918 1920 ntBASIC21.44■■□□□ 1.02
SIX3O95343 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SIX3O95343 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SIX3O95343 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.43■■□□□ 1.02
SIX3O95343 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX3O95343 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX3O95343 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
SIX3O95343 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.43■■□□□ 1.02
SIX3O95343 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX3O95343 AL035685.1-201ENST00000636663 812 ntBASIC21.43■■□□□ 1.02
SIX3O95343 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX3O95343 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX3O95343 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.43■■□□□ 1.02
SIX3O95343 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SIX3O95343 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX3O95343 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX3O95343 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX3O95343 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms