Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 ESRRAP1-201ENST00000400596 1257 ntBASIC9.98□□□□□ -0.81
USH2AO75445 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 SNORA78-201ENST00000459373 127 ntBASIC9.98□□□□□ -0.81
USH2AO75445 ADM-205ENST00000528544 586 ntTSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC9.98□□□□□ -0.81
USH2AO75445 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC9.98□□□□□ -0.81
USH2AO75445 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC9.98□□□□□ -0.81
USH2AO75445 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC9.98□□□□□ -0.81
USH2AO75445 AC141586.4-201ENST00000624558 1573 ntBASIC9.98□□□□□ -0.81
USH2AO75445 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 LINC01023-201ENST00000606054 436 ntBASIC9.98□□□□□ -0.81
USH2AO75445 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
USH2AO75445 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
USH2AO75445 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC9.98□□□□□ -0.81
USH2AO75445 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
USH2AO75445 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC9.97□□□□□ -0.81
USH2AO75445 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC9.97□□□□□ -0.81
USH2AO75445 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
USH2AO75445 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC9.97□□□□□ -0.81
USH2AO75445 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC9.97□□□□□ -0.81
USH2AO75445 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC9.97□□□□□ -0.81
USH2AO75445 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC9.97□□□□□ -0.81
USH2AO75445 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC9.97□□□□□ -0.81
USH2AO75445 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC9.97□□□□□ -0.81
USH2AO75445 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC9.97□□□□□ -0.81
USH2AO75445 AC104187.1-201ENST00000607510 612 ntBASIC9.97□□□□□ -0.81
USH2AO75445 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC9.97□□□□□ -0.81
USH2AO75445 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC9.97□□□□□ -0.81
USH2AO75445 AC133552.2-202ENST00000575694 574 ntBASIC9.97□□□□□ -0.81
USH2AO75445 MYC-209ENST00000641252 345 ntBASIC9.97□□□□□ -0.81
USH2AO75445 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
USH2AO75445 MIPEPP3-201ENST00000412105 444 ntBASIC9.96□□□□□ -0.81
USH2AO75445 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
USH2AO75445 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC9.96□□□□□ -0.81
USH2AO75445 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC9.96□□□□□ -0.81
USH2AO75445 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC9.96□□□□□ -0.81
USH2AO75445 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
USH2AO75445 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
USH2AO75445 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC9.96□□□□□ -0.81
USH2AO75445 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC9.96□□□□□ -0.81
USH2AO75445 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.81
USH2AO75445 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC9.96□□□□□ -0.81
USH2AO75445 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC9.96□□□□□ -0.81
USH2AO75445 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC9.96□□□□□ -0.81
USH2AO75445 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
USH2AO75445 AC135731.1-201ENST00000569415 2548 ntBASIC9.96□□□□□ -0.82
USH2AO75445 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
USH2AO75445 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC9.96□□□□□ -0.82
USH2AO75445 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
USH2AO75445 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC9.96□□□□□ -0.82
USH2AO75445 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC9.96□□□□□ -0.82
USH2AO75445 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.82
USH2AO75445 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC9.96□□□□□ -0.82
USH2AO75445 TMEM202-AS1-202ENST00000565181 2325 ntBASIC9.96□□□□□ -0.82
USH2AO75445 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
USH2AO75445 ABHD17AP6-201ENST00000458502 1044 ntBASIC9.96□□□□□ -0.82
USH2AO75445 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
USH2AO75445 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
USH2AO75445 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
USH2AO75445 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC9.96□□□□□ -0.82
USH2AO75445 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC9.96□□□□□ -0.82
USH2AO75445 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
USH2AO75445 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 BX088651.1-201ENST00000540551 451 ntBASIC9.95□□□□□ -0.82
USH2AO75445 PHB2-213ENST00000546111 858 ntTSL 2 BASIC9.95□□□□□ -0.82
USH2AO75445 IRX5-204ENST00000560154 879 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
USH2AO75445 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
USH2AO75445 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
USH2AO75445 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC9.95□□□□□ -0.82
USH2AO75445 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC9.95□□□□□ -0.82
USH2AO75445 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
USH2AO75445 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC9.95□□□□□ -0.82
USH2AO75445 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC9.95□□□□□ -0.82
USH2AO75445 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.82
USH2AO75445 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC9.95□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms