Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SDC3O75056 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SDC3O75056 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SDC3O75056 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SDC3O75056 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.58■■□□□ 1.05
SDC3O75056 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SDC3O75056 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SDC3O75056 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
SDC3O75056 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SDC3O75056 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.58■■□□□ 1.05
SDC3O75056 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SDC3O75056 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.58■■□□□ 1.05
SDC3O75056 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.58■■□□□ 1.05
SDC3O75056 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SDC3O75056 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SDC3O75056 AL353803.4-201ENST00000565882 1934 ntBASIC21.57■■□□□ 1.04
SDC3O75056 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 KRT18P61-201ENST00000585825 1298 ntBASIC21.57■■□□□ 1.04
SDC3O75056 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
SDC3O75056 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SDC3O75056 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.56■■□□□ 1.04
SDC3O75056 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SDC3O75056 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.56■■□□□ 1.04
SDC3O75056 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SDC3O75056 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.56■■□□□ 1.04
SDC3O75056 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.56■■□□□ 1.04
SDC3O75056 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.56■■□□□ 1.04
SDC3O75056 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.56■■□□□ 1.04
SDC3O75056 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SDC3O75056 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SDC3O75056 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SDC3O75056 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SDC3O75056 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.55■■□□□ 1.04
SDC3O75056 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.55■■□□□ 1.04
SDC3O75056 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 AL139125.2-201ENST00000623134 1869 ntBASIC21.55■■□□□ 1.04
SDC3O75056 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SDC3O75056 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SDC3O75056 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SDC3O75056 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SDC3O75056 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SDC3O75056 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.54■■□□□ 1.04
SDC3O75056 TPRG1LP1-201ENST00000598702 760 ntBASIC21.54■■□□□ 1.04
SDC3O75056 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SDC3O75056 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SDC3O75056 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SDC3O75056 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SDC3O75056 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.54■■□□□ 1.04
SDC3O75056 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SDC3O75056 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SDC3O75056 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
SDC3O75056 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.53■■□□□ 1.04
SDC3O75056 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.53■■□□□ 1.04
SDC3O75056 ID1-201ENST00000376105 1233 ntBASIC21.53■■□□□ 1.04
SDC3O75056 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.53■■□□□ 1.04
SDC3O75056 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.53■■□□□ 1.04
SDC3O75056 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.53■■□□□ 1.04
SDC3O75056 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.53■■□□□ 1.04
SDC3O75056 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.53■■□□□ 1.04
SDC3O75056 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.53■■□□□ 1.04
SDC3O75056 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.53■■□□□ 1.04
SDC3O75056 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.53■■□□□ 1.04
SDC3O75056 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.53■■□□□ 1.04
SDC3O75056 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.53■■□□□ 1.04
SDC3O75056 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.52■■□□□ 1.04
SDC3O75056 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.52■■□□□ 1.04
SDC3O75056 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.52■■□□□ 1.04
SDC3O75056 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SDC3O75056 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SDC3O75056 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.03
SDC3O75056 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.51■■□□□ 1.03
SDC3O75056 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SDC3O75056 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
SDC3O75056 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
SDC3O75056 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 AC016769.1-201ENST00000409132 1010 ntBASIC21.51■■□□□ 1.03
SDC3O75056 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 AC137761.2-201ENST00000561729 223 ntBASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms