Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH4O15457 C9orf163-202ENST00000624034 2573 ntBASIC24.81■■□□□ 1.56
MSH4O15457 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
MSH4O15457 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH4O15457 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH4O15457 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.8■■□□□ 1.56
MSH4O15457 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.8■■□□□ 1.56
MSH4O15457 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH4O15457 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.8■■□□□ 1.56
MSH4O15457 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH4O15457 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.8■■□□□ 1.56
MSH4O15457 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH4O15457 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH4O15457 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.79■■□□□ 1.56
MSH4O15457 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH4O15457 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
MSH4O15457 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.79■■□□□ 1.56
MSH4O15457 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH4O15457 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH4O15457 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH4O15457 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
MSH4O15457 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
MSH4O15457 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
MSH4O15457 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
MSH4O15457 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
MSH4O15457 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.78■■□□□ 1.56
MSH4O15457 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH4O15457 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.78■■□□□ 1.56
MSH4O15457 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH4O15457 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH4O15457 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.77■■□□□ 1.56
MSH4O15457 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
MSH4O15457 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH4O15457 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH4O15457 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH4O15457 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH4O15457 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.77■■□□□ 1.56
MSH4O15457 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.77■■□□□ 1.56
MSH4O15457 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH4O15457 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH4O15457 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.76■■□□□ 1.55
MSH4O15457 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.76■■□□□ 1.55
MSH4O15457 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
MSH4O15457 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.76■■□□□ 1.55
MSH4O15457 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
MSH4O15457 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.76■■□□□ 1.55
MSH4O15457 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.75■■□□□ 1.55
MSH4O15457 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
MSH4O15457 IRS3P-201ENST00000223076 1006 ntBASIC24.75■■□□□ 1.55
MSH4O15457 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.75■■□□□ 1.55
MSH4O15457 AC068587.7-201ENST00000641602 218 ntBASIC24.75■■□□□ 1.55
MSH4O15457 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.75■■□□□ 1.55
MSH4O15457 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.75■■□□□ 1.55
MSH4O15457 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.75■■□□□ 1.55
MSH4O15457 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.75■■□□□ 1.55
MSH4O15457 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.75■■□□□ 1.55
MSH4O15457 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
MSH4O15457 LINC01960-201ENST00000563759 1884 ntBASIC24.75■■□□□ 1.55
MSH4O15457 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.74■■□□□ 1.55
MSH4O15457 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.74■■□□□ 1.55
MSH4O15457 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
MSH4O15457 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.74■■□□□ 1.55
MSH4O15457 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
MSH4O15457 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
MSH4O15457 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.74■■□□□ 1.55
MSH4O15457 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
MSH4O15457 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
MSH4O15457 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.73■■□□□ 1.55
MSH4O15457 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms