Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CACNA1AO00555 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CACNA1AO00555 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
CACNA1AO00555 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 REXO1L12P-201ENST00000622156 912 ntBASIC21.19■□□□□ 0.98
CACNA1AO00555 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 KRT87P-202ENST00000534226 1464 ntBASIC21.19■□□□□ 0.98
CACNA1AO00555 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1AO00555 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 FP325331.1-202ENST00000623531 1380 ntBASIC21.18■□□□□ 0.98
CACNA1AO00555 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.18■□□□□ 0.98
CACNA1AO00555 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 AC079140.4-201ENST00000507448 529 ntBASIC21.18■□□□□ 0.98
CACNA1AO00555 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1AO00555 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.18■□□□□ 0.98
CACNA1AO00555 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1AO00555 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1AO00555 AC104187.1-201ENST00000607510 612 ntBASIC21.17■□□□□ 0.98
CACNA1AO00555 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CACNA1AO00555 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1AO00555 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CACNA1AO00555 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1AO00555 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1AO00555 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1AO00555 AC097639.1-201ENST00000565519 1891 ntBASIC21.17■□□□□ 0.98
CACNA1AO00555 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.17■□□□□ 0.98
CACNA1AO00555 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1AO00555 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1AO00555 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CACNA1AO00555 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1AO00555 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CACNA1AO00555 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1AO00555 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1AO00555 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1AO00555 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1AO00555 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.16■□□□□ 0.98
CACNA1AO00555 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1AO00555 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1AO00555 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.16■□□□□ 0.98
CACNA1AO00555 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1AO00555 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1AO00555 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1AO00555 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1AO00555 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1AO00555 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.15■□□□□ 0.98
CACNA1AO00555 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1AO00555 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1AO00555 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1AO00555 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.14■□□□□ 0.98
CACNA1AO00555 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1AO00555 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.14■□□□□ 0.98
CACNA1AO00555 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1AO00555 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.14■□□□□ 0.97
CACNA1AO00555 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1AO00555 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1AO00555 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.14■□□□□ 0.97
CACNA1AO00555 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1AO00555 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CACNA1AO00555 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1AO00555 MIPEPP3-201ENST00000412105 444 ntBASIC21.14■□□□□ 0.97
CACNA1AO00555 AC097493.4-201ENST00000641197 219 ntBASIC21.14■□□□□ 0.97
CACNA1AO00555 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CACNA1AO00555 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.13■□□□□ 0.97
CACNA1AO00555 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.13■□□□□ 0.97
CACNA1AO00555 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.13■□□□□ 0.97
CACNA1AO00555 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.13■□□□□ 0.97
CACNA1AO00555 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.13■□□□□ 0.97
CACNA1AO00555 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CACNA1AO00555 AL121906.2-201ENST00000621597 723 ntBASIC21.13■□□□□ 0.97
CACNA1AO00555 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.13■□□□□ 0.97
CACNA1AO00555 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1AO00555 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.13■□□□□ 0.97
CACNA1AO00555 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CACNA1AO00555 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.13■□□□□ 0.97
CACNA1AO00555 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CACNA1AO00555 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CACNA1AO00555 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CACNA1AO00555 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.12■□□□□ 0.97
CACNA1AO00555 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CACNA1AO00555 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.12■□□□□ 0.97
CACNA1AO00555 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CACNA1AO00555 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms