Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 YBX1P1-201ENST00000445822 960 ntBASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMIM28A0A1B0GU29 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 AC105233.4-201ENST00000642045 216 ntBASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 DUSP8P3-201ENST00000399571 1760 ntBASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMIM28A0A1B0GU29 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMIM28A0A1B0GU29 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMIM28A0A1B0GU29 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 AC010141.3-201ENST00000456659 717 ntBASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SMIM28A0A1B0GU29 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 AC123595.1-201ENST00000440769 1046 ntBASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMIM28A0A1B0GU29 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 AL162430.1-201ENST00000480705 870 ntBASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 AC087239.1-201ENST00000622671 572 ntBASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMIM28A0A1B0GU29 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.38
SMIM28A0A1B0GU29 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.64■■□□□ 1.38
SMIM28A0A1B0GU29 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
SMIM28A0A1B0GU29 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.64■■□□□ 1.37
SMIM28A0A1B0GU29 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SMIM28A0A1B0GU29 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
SMIM28A0A1B0GU29 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
SMIM28A0A1B0GU29 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.63■■□□□ 1.37
SMIM28A0A1B0GU29 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms