Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 MIR638-201ENST00000385237 100 ntBASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 AC008764.7-201ENST00000593779 1081 ntBASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 AC233992.3-201ENST00000607491 485 ntBASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 AC027682.1-201ENST00000562846 899 ntBASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 AC010525.1-201ENST00000585559 441 ntBASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 AC005837.3-201ENST00000612163 286 ntBASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV41A0A0B4J266 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 AP001330.3-201ENST00000520123 633 ntBASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 AF213884.3-201ENST00000563833 479 ntBASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 AC142381.2-201ENST00000566120 298 ntBASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV41A0A0B4J266 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
TRAV41A0A0B4J266 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.27■□□□□ 0.35
TRAV41A0A0B4J266 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV41A0A0B4J266 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 AC126544.1-201ENST00000580842 1059 ntBASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 C9orf163-202ENST00000624034 2573 ntBASIC17.26■□□□□ 0.35
TRAV41A0A0B4J266 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 LINC01960-201ENST00000563759 1884 ntBASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 MIR939-201ENST00000401314 82 ntBASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 AC099791.1-201ENST00000416440 715 ntBASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 AL031432.3-201ENST00000607698 485 ntBASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 AC068587.7-201ENST00000641602 218 ntBASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV41A0A0B4J266 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AC091305.1-201ENST00000479476 895 ntBASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 SUDS3P1-201ENST00000505831 966 ntBASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms