Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRAV39A0A0B4J263 PKD1P6-201ENST00000343738 4769 ntBASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 AC004687.1-201ENST00000579003 1625 ntBASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 DUX4L4-201ENST00000566884 1269 ntBASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 C17orf82-201ENST00000623772 1530 ntBASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV39A0A0B4J263 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 AC242852.2-201ENST00000615738 1807 ntBASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TRAV39A0A0B4J263 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 GUSBP5-201ENST00000418136 578 ntBASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 AC127496.7-201ENST00000625110 1798 ntBASIC18.36■□□□□ 0.53
TRAV39A0A0B4J263 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV39A0A0B4J263 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 AL117332.1-201ENST00000622628 974 ntBASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV39A0A0B4J263 AC139530.1-201ENST00000575312 1977 ntBASIC18.33■□□□□ 0.53
TRAV39A0A0B4J263 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 AC009086.3-201ENST00000623486 1008 ntBASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
TRAV39A0A0B4J263 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms