Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
NPIPA3F8WFD2 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
NPIPA3F8WFD2 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
NPIPA3F8WFD2 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
NPIPA3F8WFD2 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 KRT18P40-201ENST00000599859 1571 ntBASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 AC099521.3-201ENST00000624251 2938 ntBASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
NPIPA3F8WFD2 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PARP15-205ENST00000483793 4439 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC008132.1-203ENST00000412938 5920 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC135506.1-201ENST00000603877 1799 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 NUTM2HP-201ENST00000442076 2498 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 Z98259.1-201ENST00000564261 1697 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 UROS-201ENST00000368774 744 ntTSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TREX1-203ENST00000456089 629 ntTSL 3 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AC102953.2-201ENST00000609755 3026 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 EDRF1-201ENST00000337623 4387 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 AL450468.2-201ENST00000565955 1889 ntBASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC11.95□□□□□ -0.5
NPIPA3F8WFD2 CACNA1C-219ENST00000399649 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
NPIPA3F8WFD2 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NPIPA3F8WFD2 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
NPIPA3F8WFD2 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
NPIPA3F8WFD2 AC023355.1-202ENST00000612262 4242 ntTSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms