Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LSM4Q9Y4Z0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 AL136116.3-201ENST00000402907 1138 ntBASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 MIR3621-201ENST00000580529 85 ntBASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 AL117332.1-201ENST00000622628 974 ntBASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM4Q9Y4Z0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 MIR6724-1-201ENST00000616420 92 ntBASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 MIR6724-2-201ENST00000616483 92 ntBASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 MIR6724-4-201ENST00000617390 92 ntBASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 MIR6724-3-201ENST00000622482 92 ntBASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LSM4Q9Y4Z0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 AC092053.2-201ENST00000640557 1818 ntBASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LSM4Q9Y4Z0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 C11orf96-202ENST00000528572 1834 ntBASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LSM4Q9Y4Z0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
LSM4Q9Y4Z0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
LSM4Q9Y4Z0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM4Q9Y4Z0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LSM4Q9Y4Z0 LBH-205ENST00000407930 756 ntTSL 2 BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 MTDHP2-201ENST00000601468 714 ntBASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM4Q9Y4Z0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 AL356740.2-201ENST00000601559 647 ntBASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM4Q9Y4Z0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms