Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR6724-1-201ENST00000616420 92 ntBASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 MIR6724-2-201ENST00000616483 92 ntBASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 MIR6724-4-201ENST00000617390 92 ntBASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 MIR6724-3-201ENST00000622482 92 ntBASIC19.89■□□□□ 0.77
HIF3AQ9Y2N7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HIF3AQ9Y2N7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HIF3AQ9Y2N7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HIF3AQ9Y2N7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 AC139530.1-201ENST00000575312 1977 ntBASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HIF3AQ9Y2N7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 AL035685.1-201ENST00000636663 812 ntBASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HIF3AQ9Y2N7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HIF3AQ9Y2N7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.83■□□□□ 0.77
HIF3AQ9Y2N7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
HIF3AQ9Y2N7 LINC00565-201ENST00000562710 2331 ntBASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 LINC01960-201ENST00000563759 1884 ntBASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 AC080038.3-201ENST00000623346 1952 ntBASIC19.83■□□□□ 0.76
HIF3AQ9Y2N7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms