Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
USE1Q9NZ43 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USE1Q9NZ43 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
USE1Q9NZ43 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.47■□□□□ 0.87
USE1Q9NZ43 AC011551.1-201ENST00000614101 683 ntBASIC20.47■□□□□ 0.87
USE1Q9NZ43 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.47■□□□□ 0.87
USE1Q9NZ43 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USE1Q9NZ43 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
USE1Q9NZ43 FAM99A-202ENST00000538190 1989 ntBASIC20.46■□□□□ 0.87
USE1Q9NZ43 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
USE1Q9NZ43 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
USE1Q9NZ43 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
USE1Q9NZ43 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
USE1Q9NZ43 AC010542.4-201ENST00000563151 1910 ntBASIC20.45■□□□□ 0.86
USE1Q9NZ43 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
USE1Q9NZ43 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USE1Q9NZ43 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.45■□□□□ 0.86
USE1Q9NZ43 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USE1Q9NZ43 AC133552.2-201ENST00000619106 1032 ntBASIC20.45■□□□□ 0.86
USE1Q9NZ43 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.45■□□□□ 0.86
USE1Q9NZ43 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USE1Q9NZ43 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
USE1Q9NZ43 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USE1Q9NZ43 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
USE1Q9NZ43 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USE1Q9NZ43 AC018755.3-202ENST00000596210 929 ntBASIC20.44■□□□□ 0.86
USE1Q9NZ43 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.44■□□□□ 0.86
USE1Q9NZ43 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.43■□□□□ 0.86
USE1Q9NZ43 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
USE1Q9NZ43 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USE1Q9NZ43 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.42■□□□□ 0.86
USE1Q9NZ43 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.42■□□□□ 0.86
USE1Q9NZ43 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USE1Q9NZ43 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
USE1Q9NZ43 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.42■□□□□ 0.86
USE1Q9NZ43 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USE1Q9NZ43 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
USE1Q9NZ43 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USE1Q9NZ43 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
USE1Q9NZ43 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USE1Q9NZ43 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.41■□□□□ 0.86
USE1Q9NZ43 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USE1Q9NZ43 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USE1Q9NZ43 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USE1Q9NZ43 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USE1Q9NZ43 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.41■□□□□ 0.86
USE1Q9NZ43 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USE1Q9NZ43 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USE1Q9NZ43 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USE1Q9NZ43 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USE1Q9NZ43 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USE1Q9NZ43 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USE1Q9NZ43 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USE1Q9NZ43 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USE1Q9NZ43 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USE1Q9NZ43 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
USE1Q9NZ43 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms