Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP1AQ9HD42 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 AC079630.1-202ENST00000618127 1840 ntBASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 AF131216.4-201ENST00000638924 1588 ntBASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP1AQ9HD42 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP1AQ9HD42 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 TSPY13P-201ENST00000338964 914 ntBASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 AC004448.1-201ENST00000458332 883 ntBASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 AL137060.1-201ENST00000618151 2648 ntBASIC18.84■□□□□ 0.61
CHMP1AQ9HD42 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CHMP1AQ9HD42 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP1AQ9HD42 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP1AQ9HD42 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.83■□□□□ 0.61
CHMP1AQ9HD42 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP1AQ9HD42 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 PVT1_1.1-201ENST00000615125 194 ntBASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP1AQ9HD42 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP1AQ9HD42 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms