Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS35Q96QK1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS35Q96QK1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS35Q96QK1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS35Q96QK1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS35Q96QK1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS35Q96QK1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS35Q96QK1 BX842568.3-201ENST00000418104 571 ntBASIC21.89■■□□□ 1.09
VPS35Q96QK1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS35Q96QK1 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.89■■□□□ 1.09
VPS35Q96QK1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS35Q96QK1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 SUDS3P1-201ENST00000505831 966 ntBASIC21.88■■□□□ 1.09
VPS35Q96QK1 AP001330.3-201ENST00000520123 633 ntBASIC21.88■■□□□ 1.09
VPS35Q96QK1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 AC005837.3-201ENST00000612163 286 ntBASIC21.88■■□□□ 1.09
VPS35Q96QK1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS35Q96QK1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS35Q96QK1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS35Q96QK1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS35Q96QK1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS35Q96QK1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
VPS35Q96QK1 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS35Q96QK1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS35Q96QK1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 MIR939-201ENST00000401314 82 ntBASIC21.86■■□□□ 1.09
VPS35Q96QK1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.86■■□□□ 1.09
VPS35Q96QK1 SLC47A1P1-202ENST00000449666 945 ntBASIC21.86■■□□□ 1.09
VPS35Q96QK1 AC027682.1-201ENST00000562846 899 ntBASIC21.86■■□□□ 1.09
VPS35Q96QK1 AC233992.3-201ENST00000607491 485 ntBASIC21.86■■□□□ 1.09
VPS35Q96QK1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS35Q96QK1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
VPS35Q96QK1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS35Q96QK1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS35Q96QK1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
VPS35Q96QK1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS35Q96QK1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS35Q96QK1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS35Q96QK1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS35Q96QK1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS35Q96QK1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 AF213884.3-201ENST00000563833 479 ntBASIC21.84■■□□□ 1.09
VPS35Q96QK1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 AL136967.2-201ENST00000623968 743 ntBASIC21.84■■□□□ 1.09
VPS35Q96QK1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS35Q96QK1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS35Q96QK1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS35Q96QK1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS35Q96QK1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS35Q96QK1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS35Q96QK1 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS35Q96QK1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
VPS35Q96QK1 AC091305.1-201ENST00000479476 895 ntBASIC21.83■■□□□ 1.09
VPS35Q96QK1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS35Q96QK1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS35Q96QK1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS35Q96QK1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VPS35Q96QK1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS35Q96QK1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
VPS35Q96QK1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
VPS35Q96QK1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
VPS35Q96QK1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.83■■□□□ 1.08
VPS35Q96QK1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS35Q96QK1 AC142381.2-201ENST00000566120 298 ntBASIC21.82■■□□□ 1.08
VPS35Q96QK1 AC010525.1-201ENST00000585559 441 ntBASIC21.82■■□□□ 1.08
VPS35Q96QK1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS35Q96QK1 RASA4CP-201ENST00000424092 1398 ntBASIC21.82■■□□□ 1.08
VPS35Q96QK1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms