Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SH3RF1Q7Z6J0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
SH3RF1Q7Z6J0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 AC004911.1-201ENST00000416316 871 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 SLC47A1P1-202ENST00000449666 945 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L2-201ENST00000561772 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L6-201ENST00000626483 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L1-201ENST00000627662 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L8-201ENST00000629013 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L3-201ENST00000630187 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L7-201ENST00000630678 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 DUX4L5-201ENST00000630834 1275 ntBASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SH3RF1Q7Z6J0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 BX842568.3-201ENST00000418104 571 ntBASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SH3RF1Q7Z6J0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 YBX1P1-201ENST00000445822 960 ntBASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 GALC-202ENST00000393568 2054 ntTSL 2 BASIC25.33■■□□□ 1.65
SH3RF1Q7Z6J0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
SH3RF1Q7Z6J0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
SH3RF1Q7Z6J0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
SH3RF1Q7Z6J0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 ID1-201ENST00000376105 1233 ntBASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 C17orf82-201ENST00000623772 1530 ntBASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.32■■□□□ 1.64
SH3RF1Q7Z6J0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
SH3RF1Q7Z6J0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 MIR3181-201ENST00000578512 73 ntBASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
SH3RF1Q7Z6J0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms