Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 KRT18P60-201ENST00000312876 1297 ntBASIC19.63■□□□□ 0.73
LIMS3P0CW19 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS3P0CW19 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIMS3P0CW19 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS3P0CW19 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS3P0CW19 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIMS3P0CW19 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.62■□□□□ 0.73
LIMS3P0CW19 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIMS3P0CW19 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.61■□□□□ 0.73
LIMS3P0CW19 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.6■□□□□ 0.73
LIMS3P0CW19 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LIMS3P0CW19 THA1P-201ENST00000590384 1145 ntBASIC19.6■□□□□ 0.73
LIMS3P0CW19 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIMS3P0CW19 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIMS3P0CW19 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
LIMS3P0CW19 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.59■□□□□ 0.73
LIMS3P0CW19 KRT18P24-201ENST00000344739 1156 ntBASIC19.59■□□□□ 0.73
LIMS3P0CW19 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.59■□□□□ 0.73
LIMS3P0CW19 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIMS3P0CW19 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIMS3P0CW19 SLC25A24-204ENST00000569674 2357 ntBASIC19.58■□□□□ 0.73
LIMS3P0CW19 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LIMS3P0CW19 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
LIMS3P0CW19 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.58■□□□□ 0.73
LIMS3P0CW19 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIMS3P0CW19 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.58■□□□□ 0.73
LIMS3P0CW19 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
LIMS3P0CW19 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMS3P0CW19 AC139795.1-202ENST00000500444 432 ntBASIC19.58■□□□□ 0.72
LIMS3P0CW19 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIMS3P0CW19 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LIMS3P0CW19 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
LIMS3P0CW19 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMS3P0CW19 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
LIMS3P0CW19 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 RARRES2P2-201ENST00000394842 485 ntBASIC19.57■□□□□ 0.72
LIMS3P0CW19 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.57■□□□□ 0.72
LIMS3P0CW19 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.57■□□□□ 0.72
LIMS3P0CW19 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIMS3P0CW19 AC005229.4-201ENST00000610085 2198 ntBASIC19.57■□□□□ 0.72
LIMS3P0CW19 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.56■□□□□ 0.72
LIMS3P0CW19 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.56■□□□□ 0.72
LIMS3P0CW19 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.56■□□□□ 0.72
LIMS3P0CW19 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
LIMS3P0CW19 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMS3P0CW19 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMS3P0CW19 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 LINC01960-201ENST00000563759 1884 ntBASIC19.55■□□□□ 0.72
LIMS3P0CW19 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms