Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL353803.4-201ENST00000565882 1934 ntBASIC18.7■□□□□ 0.58
SDCBPO00560 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDCBPO00560 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SDCBPO00560 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.69■□□□□ 0.58
SDCBPO00560 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.69■□□□□ 0.58
SDCBPO00560 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.69■□□□□ 0.58
SDCBPO00560 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SDCBPO00560 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.69■□□□□ 0.58
SDCBPO00560 BX664725.1-201ENST00000438252 379 ntBASIC18.69■□□□□ 0.58
SDCBPO00560 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.69■□□□□ 0.58
SDCBPO00560 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 AC139530.1-201ENST00000575312 1977 ntBASIC18.69■□□□□ 0.58
SDCBPO00560 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.69■□□□□ 0.58
SDCBPO00560 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SDCBPO00560 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDCBPO00560 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SDCBPO00560 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.68■□□□□ 0.58
SDCBPO00560 AC092053.2-201ENST00000640557 1818 ntBASIC18.68■□□□□ 0.58
SDCBPO00560 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.68■□□□□ 0.58
SDCBPO00560 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SDCBPO00560 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SDCBPO00560 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.68■□□□□ 0.58
SDCBPO00560 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDCBPO00560 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
SDCBPO00560 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.68■□□□□ 0.58
SDCBPO00560 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SDCBPO00560 C11orf96-202ENST00000528572 1834 ntBASIC18.67■□□□□ 0.58
SDCBPO00560 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.67■□□□□ 0.58
SDCBPO00560 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SDCBPO00560 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
SDCBPO00560 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.67■□□□□ 0.58
SDCBPO00560 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.67■□□□□ 0.58
SDCBPO00560 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.67■□□□□ 0.58
SDCBPO00560 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.67■□□□□ 0.58
SDCBPO00560 SNX5-217ENST00000606557 1087 ntBASIC18.67■□□□□ 0.58
SDCBPO00560 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SDCBPO00560 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.67■□□□□ 0.58
SDCBPO00560 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SDCBPO00560 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.67■□□□□ 0.58
SDCBPO00560 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SDCBPO00560 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.66■□□□□ 0.58
SDCBPO00560 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDCBPO00560 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.66■□□□□ 0.58
SDCBPO00560 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDCBPO00560 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.66■□□□□ 0.58
SDCBPO00560 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SDCBPO00560 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SDCBPO00560 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDCBPO00560 AC080038.3-201ENST00000623346 1952 ntBASIC18.66■□□□□ 0.58
SDCBPO00560 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SDCBPO00560 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDCBPO00560 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.65■□□□□ 0.58
SDCBPO00560 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 RARRES2P1-201ENST00000474487 481 ntBASIC18.65■□□□□ 0.58
SDCBPO00560 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.65■□□□□ 0.58
SDCBPO00560 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SDCBPO00560 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SDCBPO00560 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.65■□□□□ 0.58
SDCBPO00560 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SDCBPO00560 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.65■□□□□ 0.58
SDCBPO00560 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDCBPO00560 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SDCBPO00560 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SDCBPO00560 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SDCBPO00560 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SDCBPO00560 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms