Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 AL117332.1-201ENST00000622628 974 ntBASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HLA-DRB4X5D2U9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC16.58■□□□□ 0.25
HLA-DRB4X5D2U9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.58■□□□□ 0.25
HLA-DRB4X5D2U9 PKD1P6-201ENST00000343738 4769 ntBASIC16.58■□□□□ 0.25
HLA-DRB4X5D2U9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DRB4X5D2U9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HLA-DRB4X5D2U9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 FP325331.1-202ENST00000623531 1380 ntBASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HLA-DRB4X5D2U9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 AL353803.4-201ENST00000565882 1934 ntBASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 MIR3621-201ENST00000580529 85 ntBASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 AC137767.1-201ENST00000602918 1920 ntBASIC16.57■□□□□ 0.24
HLA-DRB4X5D2U9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 C17orf82-201ENST00000623772 1530 ntBASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 LINC01529-204ENST00000636474 1715 ntBASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DRB4X5D2U9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 C9orf163-202ENST00000624034 2573 ntBASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HLA-DRB4X5D2U9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.54■□□□□ 0.24
HLA-DRB4X5D2U9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
HLA-DRB4X5D2U9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms