Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC61Q9Y6R9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC61Q9Y6R9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
CCDC61Q9Y6R9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 AC020928.2-201ENST00000588717 2197 ntBASIC30.61■■■□□ 2.49
CCDC61Q9Y6R9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC61Q9Y6R9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC61Q9Y6R9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC61Q9Y6R9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC30.6■■■□□ 2.49
CCDC61Q9Y6R9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC61Q9Y6R9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC61Q9Y6R9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.59■■■□□ 2.49
CCDC61Q9Y6R9 KRT18P61-201ENST00000585825 1298 ntBASIC30.59■■■□□ 2.49
CCDC61Q9Y6R9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC30.59■■■□□ 2.49
CCDC61Q9Y6R9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.59■■■□□ 2.49
CCDC61Q9Y6R9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 TPRG1LP1-201ENST00000598702 760 ntBASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC61Q9Y6R9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 LINC00543-201ENST00000567234 1845 ntBASIC30.57■■■□□ 2.48
CCDC61Q9Y6R9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC61Q9Y6R9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
CCDC61Q9Y6R9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC61Q9Y6R9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC61Q9Y6R9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 AC079630.1-202ENST00000618127 1840 ntBASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC61Q9Y6R9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.54■■■□□ 2.48
CCDC61Q9Y6R9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC61Q9Y6R9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms