Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 AC080038.3-201ENST00000623346 1952 ntBASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
PCDHA3Q9Y5H8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDHA3Q9Y5H8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 AC092053.2-201ENST00000640557 1818 ntBASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
PCDHA3Q9Y5H8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 AC092028.1-203ENST00000608262 953 ntBASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDHA3Q9Y5H8 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 DUX4L4-201ENST00000566884 1269 ntBASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDHA3Q9Y5H8 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHA3Q9Y5H8 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHA3Q9Y5H8 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.14■■□□□ 1.29
PCDHA3Q9Y5H8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PCDHA3Q9Y5H8 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PCDHA3Q9Y5H8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 C11orf96-202ENST00000528572 1834 ntBASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.12■■□□□ 1.29
PCDHA3Q9Y5H8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PCDHA3Q9Y5H8 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 Z92544.1-202ENST00000571933 1220 ntBASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PCDHA3Q9Y5H8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms