Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.04■■□□□ 1.28
EBF3Q9H4W6 AC010525.1-201ENST00000585559 441 ntBASIC23.04■■□□□ 1.28
EBF3Q9H4W6 AC079834.2-201ENST00000609776 1949 ntBASIC23.04■■□□□ 1.28
EBF3Q9H4W6 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
EBF3Q9H4W6 LINC00543-201ENST00000567234 1845 ntBASIC23.03■■□□□ 1.28
EBF3Q9H4W6 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 MIR6084-201ENST00000622012 110 ntBASIC23.02■■□□□ 1.28
EBF3Q9H4W6 AL358852.1-201ENST00000623174 1268 ntBASIC23.02■■□□□ 1.28
EBF3Q9H4W6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.02■■□□□ 1.28
EBF3Q9H4W6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 MIR572-201ENST00000384983 95 ntBASIC23.01■■□□□ 1.27
EBF3Q9H4W6 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 CLDN5-201ENST00000403084 2357 ntBASIC23.01■■□□□ 1.27
EBF3Q9H4W6 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
EBF3Q9H4W6 FP325331.1-202ENST00000623531 1380 ntBASIC23.01■■□□□ 1.27
EBF3Q9H4W6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23■■□□□ 1.27
EBF3Q9H4W6 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23■■□□□ 1.27
EBF3Q9H4W6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23■■□□□ 1.27
EBF3Q9H4W6 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23■■□□□ 1.27
EBF3Q9H4W6 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23■■□□□ 1.27
EBF3Q9H4W6 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23■■□□□ 1.27
EBF3Q9H4W6 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 DUX4L4-201ENST00000566884 1269 ntBASIC22.99■■□□□ 1.27
EBF3Q9H4W6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
EBF3Q9H4W6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 AC027612.3-201ENST00000413684 1047 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 KRT18P5-201ENST00000436075 1291 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 AC012414.1-201ENST00000556676 535 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L2-201ENST00000561772 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 IKBKGP1-201ENST00000612193 1073 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L6-201ENST00000626483 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L1-201ENST00000627662 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L8-201ENST00000629013 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L3-201ENST00000630187 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L7-201ENST00000630678 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 DUX4L5-201ENST00000630834 1275 ntBASIC22.98■■□□□ 1.27
EBF3Q9H4W6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.98■■□□□ 1.27
EBF3Q9H4W6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms