Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PAAF1Q9BRP4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.81■■□□□ 1.4
PAAF1Q9BRP4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
PAAF1Q9BRP4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PAAF1Q9BRP4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PAAF1Q9BRP4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 YBX1P1-201ENST00000445822 960 ntBASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 AC012414.1-201ENST00000556676 535 ntBASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PAAF1Q9BRP4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PAAF1Q9BRP4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 AL358852.1-201ENST00000623174 1268 ntBASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PAAF1Q9BRP4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 AC027612.3-201ENST00000413684 1047 ntBASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 AP005435.1-201ENST00000529293 1178 ntBASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PAAF1Q9BRP4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L2-201ENST00000561772 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L6-201ENST00000626483 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L1-201ENST00000627662 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L8-201ENST00000629013 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L3-201ENST00000630187 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L7-201ENST00000630678 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 DUX4L5-201ENST00000630834 1275 ntBASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.75■■□□□ 1.39
PAAF1Q9BRP4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.74■■□□□ 1.39
PAAF1Q9BRP4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 AC034268.1-201ENST00000441047 882 ntBASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 AL354811.1-201ENST00000610286 706 ntBASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.73■■□□□ 1.39
PAAF1Q9BRP4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms