Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
PTX4Q96A99 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 MIR4281-201ENST00000580852 62 ntBASIC18.9■□□□□ 0.62
PTX4Q96A99 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.9■□□□□ 0.62
PTX4Q96A99 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PTX4Q96A99 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PTX4Q96A99 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
PTX4Q96A99 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTX4Q96A99 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PTX4Q96A99 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PTX4Q96A99 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.89■□□□□ 0.61
PTX4Q96A99 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.89■□□□□ 0.61
PTX4Q96A99 THA1P-201ENST00000590384 1145 ntBASIC18.89■□□□□ 0.61
PTX4Q96A99 NTF6A-201ENST00000591175 560 ntBASIC18.89■□□□□ 0.61
PTX4Q96A99 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
PTX4Q96A99 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PTX4Q96A99 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PTX4Q96A99 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTX4Q96A99 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.88■□□□□ 0.61
PTX4Q96A99 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.88■□□□□ 0.61
PTX4Q96A99 AC139795.1-202ENST00000500444 432 ntBASIC18.88■□□□□ 0.61
PTX4Q96A99 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.88■□□□□ 0.61
PTX4Q96A99 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTX4Q96A99 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.88■□□□□ 0.61
PTX4Q96A99 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
PTX4Q96A99 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.87■□□□□ 0.61
PTX4Q96A99 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PTX4Q96A99 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.87■□□□□ 0.61
PTX4Q96A99 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.87■□□□□ 0.61
PTX4Q96A99 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PTX4Q96A99 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.87■□□□□ 0.61
PTX4Q96A99 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.87■□□□□ 0.61
PTX4Q96A99 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTX4Q96A99 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.86■□□□□ 0.61
PTX4Q96A99 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTX4Q96A99 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTX4Q96A99 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PTX4Q96A99 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTX4Q96A99 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTX4Q96A99 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTX4Q96A99 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.86■□□□□ 0.61
PTX4Q96A99 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.86■□□□□ 0.61
PTX4Q96A99 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTX4Q96A99 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.86■□□□□ 0.61
PTX4Q96A99 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTX4Q96A99 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTX4Q96A99 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTX4Q96A99 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTX4Q96A99 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.85■□□□□ 0.61
PTX4Q96A99 FP325331.1-202ENST00000623531 1380 ntBASIC18.85■□□□□ 0.61
PTX4Q96A99 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.85■□□□□ 0.61
PTX4Q96A99 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTX4Q96A99 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTX4Q96A99 AC026310.3-201ENST00000625186 2373 ntBASIC18.85■□□□□ 0.61
PTX4Q96A99 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTX4Q96A99 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.85■□□□□ 0.61
PTX4Q96A99 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTX4Q96A99 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
PTX4Q96A99 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.84■□□□□ 0.61
PTX4Q96A99 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.84■□□□□ 0.61
PTX4Q96A99 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.84■□□□□ 0.61
PTX4Q96A99 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.84■□□□□ 0.61
PTX4Q96A99 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 LINC01529-204ENST00000636474 1715 ntBASIC18.84■□□□□ 0.61
PTX4Q96A99 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.84■□□□□ 0.61
PTX4Q96A99 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTX4Q96A99 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
PTX4Q96A99 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
PTX4Q96A99 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms