Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 AC079630.1-202ENST00000618127 1840 ntBASIC21.69■■□□□ 1.06
LMX1AQ8TE12 AL139125.2-201ENST00000623134 1869 ntBASIC21.69■■□□□ 1.06
LMX1AQ8TE12 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.69■■□□□ 1.06
LMX1AQ8TE12 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1AQ8TE12 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1AQ8TE12 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.68■■□□□ 1.06
LMX1AQ8TE12 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.68■■□□□ 1.06
LMX1AQ8TE12 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LMX1AQ8TE12 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.67■■□□□ 1.06
LMX1AQ8TE12 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 CCDC92B-201ENST00000575506 885 ntBASIC21.66■■□□□ 1.06
LMX1AQ8TE12 AC022517.1-201ENST00000592429 346 ntBASIC21.66■■□□□ 1.06
LMX1AQ8TE12 AC105233.4-201ENST00000642045 216 ntBASIC21.66■■□□□ 1.06
LMX1AQ8TE12 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LMX1AQ8TE12 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 IKBKGP1-201ENST00000612193 1073 ntBASIC21.65■■□□□ 1.06
LMX1AQ8TE12 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.65■■□□□ 1.06
LMX1AQ8TE12 ABCB10P4-201ENST00000566803 2184 ntBASIC21.64■■□□□ 1.06
LMX1AQ8TE12 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.64■■□□□ 1.05
LMX1AQ8TE12 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 AC004687.1-201ENST00000579003 1625 ntBASIC21.64■■□□□ 1.05
LMX1AQ8TE12 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LMX1AQ8TE12 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LMX1AQ8TE12 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 LINC02228-203ENST00000641970 1355 ntBASIC21.62■■□□□ 1.05
LMX1AQ8TE12 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 KRT18P14-201ENST00000534205 1250 ntBASIC21.62■■□□□ 1.05
LMX1AQ8TE12 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LMX1AQ8TE12 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LMX1AQ8TE12 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms