Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC27.14■■□□□ 1.94
USP48Q86UV5 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
USP48Q86UV5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC27.14■■□□□ 1.94
USP48Q86UV5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
USP48Q86UV5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC27.14■■□□□ 1.94
USP48Q86UV5 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC27.14■■□□□ 1.94
USP48Q86UV5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC27.14■■□□□ 1.94
USP48Q86UV5 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
USP48Q86UV5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.14■■□□□ 1.94
USP48Q86UV5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
USP48Q86UV5 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
USP48Q86UV5 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
USP48Q86UV5 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
USP48Q86UV5 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
USP48Q86UV5 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
USP48Q86UV5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.13■■□□□ 1.93
USP48Q86UV5 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP48Q86UV5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC27.13■■□□□ 1.93
USP48Q86UV5 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP48Q86UV5 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP48Q86UV5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.13■■□□□ 1.93
USP48Q86UV5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
USP48Q86UV5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
USP48Q86UV5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
USP48Q86UV5 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
USP48Q86UV5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC27.12■■□□□ 1.93
USP48Q86UV5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC27.12■■□□□ 1.93
USP48Q86UV5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC27.12■■□□□ 1.93
USP48Q86UV5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
USP48Q86UV5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 AL022069.1-201ENST00000568025 1636 ntBASIC27.12■■□□□ 1.93
USP48Q86UV5 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.12■■□□□ 1.93
USP48Q86UV5 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
USP48Q86UV5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
USP48Q86UV5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USP48Q86UV5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
USP48Q86UV5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.11■■□□□ 1.93
USP48Q86UV5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USP48Q86UV5 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USP48Q86UV5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC27.1■■□□□ 1.93
USP48Q86UV5 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC27.1■■□□□ 1.93
USP48Q86UV5 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP48Q86UV5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
USP48Q86UV5 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC27.1■■□□□ 1.93
USP48Q86UV5 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
USP48Q86UV5 MIR572-201ENST00000384983 95 ntBASIC27.1■■□□□ 1.93
USP48Q86UV5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC27.1■■□□□ 1.93
USP48Q86UV5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC27.1■■□□□ 1.93
USP48Q86UV5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
USP48Q86UV5 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC27.09■■□□□ 1.93
USP48Q86UV5 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.09■■□□□ 1.93
USP48Q86UV5 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC27.09■■□□□ 1.93
USP48Q86UV5 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP48Q86UV5 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP48Q86UV5 AC012414.1-201ENST00000556676 535 ntBASIC27.09■■□□□ 1.93
USP48Q86UV5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC27.09■■□□□ 1.93
USP48Q86UV5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
USP48Q86UV5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP48Q86UV5 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.09■■□□□ 1.93
USP48Q86UV5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
USP48Q86UV5 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
USP48Q86UV5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
USP48Q86UV5 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC27.08■■□□□ 1.93
USP48Q86UV5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC27.08■■□□□ 1.93
USP48Q86UV5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
USP48Q86UV5 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
USP48Q86UV5 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USP48Q86UV5 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
USP48Q86UV5 ABCB10P4-201ENST00000566803 2184 ntBASIC27.07■■□□□ 1.92
USP48Q86UV5 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC27.07■■□□□ 1.92
USP48Q86UV5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.07■■□□□ 1.92
USP48Q86UV5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC27.07■■□□□ 1.92
USP48Q86UV5 KRT18P14-201ENST00000534205 1250 ntBASIC27.07■■□□□ 1.92
USP48Q86UV5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC27.07■■□□□ 1.92
USP48Q86UV5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
USP48Q86UV5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC27.06■■□□□ 1.92
USP48Q86UV5 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.06■■□□□ 1.92
USP48Q86UV5 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.06■■□□□ 1.92
USP48Q86UV5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC27.06■■□□□ 1.92
USP48Q86UV5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC27.06■■□□□ 1.92
USP48Q86UV5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC27.06■■□□□ 1.92
USP48Q86UV5 IGHV3-19-201ENST00000521488 291 ntBASIC27.06■■□□□ 1.92
USP48Q86UV5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC27.06■■□□□ 1.92
USP48Q86UV5 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP48Q86UV5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.05■■□□□ 1.92
USP48Q86UV5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP48Q86UV5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USP48Q86UV5 AL354811.1-201ENST00000610286 706 ntBASIC27.05■■□□□ 1.92
USP48Q86UV5 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms