Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF111Q6ZNA4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 AC092028.1-203ENST00000608262 953 ntBASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNF111Q6ZNA4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 AC131274.2-201ENST00000580697 1507 ntBASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF111Q6ZNA4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 GUSBP5-201ENST00000418136 578 ntBASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 AL161729.1-201ENST00000604104 1402 ntBASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RNF111Q6ZNA4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 FBXW4P1-201ENST00000426721 2239 ntBASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 TSPY9P-201ENST00000440215 945 ntBASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 TSPY11P-201ENST00000442607 1045 ntBASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 SNX5-217ENST00000606557 1087 ntBASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF111Q6ZNA4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 AC139530.1-201ENST00000575312 1977 ntBASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 AC004448.1-201ENST00000458332 883 ntBASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RNF111Q6ZNA4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF111Q6ZNA4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 AC073130.3-201ENST00000624389 2278 ntBASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.39■■□□□ 1.01
RNF111Q6ZNA4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RNF111Q6ZNA4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms