Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RUNDC3AQ59EK9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.92■□□□□ 0.94
RUNDC3AQ59EK9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RUNDC3AQ59EK9 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.9■□□□□ 0.94
RUNDC3AQ59EK9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
RUNDC3AQ59EK9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
RUNDC3AQ59EK9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.89■□□□□ 0.94
RUNDC3AQ59EK9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RUNDC3AQ59EK9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.88■□□□□ 0.93
RUNDC3AQ59EK9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 AC103834.1-201ENST00000520383 144 ntBASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RUNDC3AQ59EK9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 LINC01529-204ENST00000636474 1715 ntBASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.86■□□□□ 0.93
RUNDC3AQ59EK9 FP325331.1-202ENST00000623531 1380 ntBASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RUNDC3AQ59EK9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 AC137630.3-201ENST00000607245 391 ntBASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RUNDC3AQ59EK9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms