Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
RPS28P62857 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
RPS28P62857 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC13.01□□□□□ -0.33
RPS28P62857 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 MST1L-201ENST00000442552 2185 ntBASIC13.01□□□□□ -0.33
RPS28P62857 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.01□□□□□ -0.33
RPS28P62857 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
RPS28P62857 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
RPS28P62857 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RPS28P62857 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 AL139384.1-201ENST00000612143 3047 ntBASIC13□□□□□ -0.33
RPS28P62857 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC13□□□□□ -0.33
RPS28P62857 AC104581.1-202ENST00000635932 2618 ntBASIC13□□□□□ -0.33
RPS28P62857 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13□□□□□ -0.33
RPS28P62857 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
RPS28P62857 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
RPS28P62857 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13□□□□□ -0.33
RPS28P62857 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
RPS28P62857 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
RPS28P62857 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
RPS28P62857 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RPS28P62857 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC12.99□□□□□ -0.33
RPS28P62857 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
RPS28P62857 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
RPS28P62857 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC12.99□□□□□ -0.33
RPS28P62857 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
RPS28P62857 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
RPS28P62857 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC12.99□□□□□ -0.33
RPS28P62857 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
RPS28P62857 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RPS28P62857 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 AC106820.2-201ENST00000563775 3264 ntBASIC12.98□□□□□ -0.33
RPS28P62857 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
RPS28P62857 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC12.98□□□□□ -0.33
RPS28P62857 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
RPS28P62857 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
RPS28P62857 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
RPS28P62857 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC12.97□□□□□ -0.33
RPS28P62857 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC12.97□□□□□ -0.33
RPS28P62857 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
RPS28P62857 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
RPS28P62857 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RPS28P62857 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
RPS28P62857 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC12.97□□□□□ -0.33
RPS28P62857 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.97□□□□□ -0.33
RPS28P62857 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
RPS28P62857 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
RPS28P62857 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms