Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.75■□□□□ 0.59
PDLIM4P50479 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
PDLIM4P50479 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.75■□□□□ 0.59
PDLIM4P50479 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.75■□□□□ 0.59
PDLIM4P50479 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.74■□□□□ 0.59
PDLIM4P50479 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.74■□□□□ 0.59
PDLIM4P50479 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.74■□□□□ 0.59
PDLIM4P50479 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PDLIM4P50479 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PDLIM4P50479 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PDLIM4P50479 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.73■□□□□ 0.59
PDLIM4P50479 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 MIR572-201ENST00000384983 95 ntBASIC18.73■□□□□ 0.59
PDLIM4P50479 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.73■□□□□ 0.59
PDLIM4P50479 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.73■□□□□ 0.59
PDLIM4P50479 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PDLIM4P50479 OR2I1P-207ENST00000453522 948 ntBASIC18.73■□□□□ 0.59
PDLIM4P50479 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.73■□□□□ 0.59
PDLIM4P50479 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.73■□□□□ 0.59
PDLIM4P50479 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PDLIM4P50479 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.72■□□□□ 0.59
PDLIM4P50479 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.72■□□□□ 0.59
PDLIM4P50479 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.72■□□□□ 0.59
PDLIM4P50479 AC138932.3-201ENST00000567634 1902 ntBASIC18.72■□□□□ 0.59
PDLIM4P50479 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PDLIM4P50479 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM4P50479 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM4P50479 LINC01529-204ENST00000636474 1715 ntBASIC18.71■□□□□ 0.59
PDLIM4P50479 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PDLIM4P50479 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PDLIM4P50479 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PDLIM4P50479 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.71■□□□□ 0.59
PDLIM4P50479 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.71■□□□□ 0.59
PDLIM4P50479 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
PDLIM4P50479 AL354811.1-201ENST00000610286 706 ntBASIC18.71■□□□□ 0.59
PDLIM4P50479 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.71■□□□□ 0.59
PDLIM4P50479 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM4P50479 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PDLIM4P50479 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM4P50479 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM4P50479 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
PDLIM4P50479 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.71■□□□□ 0.58
PDLIM4P50479 AC144652.1-201ENST00000609974 1624 ntBASIC18.71■□□□□ 0.58
PDLIM4P50479 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
PDLIM4P50479 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM4P50479 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM4P50479 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM4P50479 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.7■□□□□ 0.58
PDLIM4P50479 AC012414.1-201ENST00000556676 535 ntBASIC18.7■□□□□ 0.58
PDLIM4P50479 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.7■□□□□ 0.58
PDLIM4P50479 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM4P50479 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM4P50479 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.7■□□□□ 0.58
PDLIM4P50479 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.7■□□□□ 0.58
PDLIM4P50479 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PDLIM4P50479 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms