Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RFC3P40938 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFC3P40938 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.24■□□□□ 0.83
RFC3P40938 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFC3P40938 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFC3P40938 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RFC3P40938 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
RFC3P40938 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.23■□□□□ 0.83
RFC3P40938 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.23■□□□□ 0.83
RFC3P40938 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.23■□□□□ 0.83
RFC3P40938 AC092666.2-201ENST00000613287 246 ntBASIC20.23■□□□□ 0.83
RFC3P40938 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RFC3P40938 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
RFC3P40938 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RFC3P40938 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFC3P40938 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RFC3P40938 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.22■□□□□ 0.83
RFC3P40938 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.22■□□□□ 0.83
RFC3P40938 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFC3P40938 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFC3P40938 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.22■□□□□ 0.83
RFC3P40938 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFC3P40938 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RFC3P40938 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.22■□□□□ 0.83
RFC3P40938 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RFC3P40938 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.22■□□□□ 0.83
RFC3P40938 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.22■□□□□ 0.83
RFC3P40938 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFC3P40938 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RFC3P40938 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.21■□□□□ 0.83
RFC3P40938 MIR6821-201ENST00000617625 74 ntBASIC20.21■□□□□ 0.83
RFC3P40938 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.21■□□□□ 0.83
RFC3P40938 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.21■□□□□ 0.83
RFC3P40938 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.21■□□□□ 0.83
RFC3P40938 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFC3P40938 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.2■□□□□ 0.82
RFC3P40938 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RFC3P40938 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC3P40938 AC097381.1-201ENST00000429019 1296 ntBASIC20.2■□□□□ 0.82
RFC3P40938 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RFC3P40938 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.2■□□□□ 0.82
RFC3P40938 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC3P40938 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
RFC3P40938 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RFC3P40938 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC3P40938 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC3P40938 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC3P40938 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC3P40938 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RFC3P40938 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.19■□□□□ 0.82
RFC3P40938 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC3P40938 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.19■□□□□ 0.82
RFC3P40938 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC3P40938 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RFC3P40938 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFC3P40938 AC012676.1-201ENST00000574705 1949 ntBASIC20.19■□□□□ 0.82
RFC3P40938 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RFC3P40938 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC3P40938 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.18■□□□□ 0.82
RFC3P40938 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
RFC3P40938 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RFC3P40938 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 IGHV3-19-201ENST00000521488 291 ntBASIC20.18■□□□□ 0.82
RFC3P40938 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 CLDN5-201ENST00000403084 2357 ntBASIC20.18■□□□□ 0.82
RFC3P40938 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC3P40938 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RFC3P40938 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms