Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC16.81■□□□□ 0.28
HLA-DMBP28068 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HLA-DMBP28068 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 AC144652.1-201ENST00000609974 1624 ntBASIC16.8■□□□□ 0.28
HLA-DMBP28068 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
HLA-DMBP28068 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HLA-DMBP28068 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DMBP28068 ESRRAP2-201ENST00000418437 1549 ntBASIC16.79■□□□□ 0.28
HLA-DMBP28068 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
HLA-DMBP28068 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 AC242852.2-201ENST00000615738 1807 ntBASIC16.78■□□□□ 0.28
HLA-DMBP28068 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 MIR4787-201ENST00000607364 84 ntBASIC16.78■□□□□ 0.28
HLA-DMBP28068 AC131212.1-201ENST00000613771 668 ntBASIC16.78■□□□□ 0.28
HLA-DMBP28068 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DMBP28068 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DMBP28068 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DMBP28068 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms