Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.31■■□□□ 1.48
TPM1P09493 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.31■■□□□ 1.48
TPM1P09493 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
TPM1P09493 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.31■■□□□ 1.48
TPM1P09493 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.3■■□□□ 1.48
TPM1P09493 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 AC004448.1-201ENST00000458332 883 ntBASIC24.3■■□□□ 1.48
TPM1P09493 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.3■■□□□ 1.48
TPM1P09493 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.3■■□□□ 1.48
TPM1P09493 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TPM1P09493 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
TPM1P09493 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TPM1P09493 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.29■■□□□ 1.48
TPM1P09493 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
TPM1P09493 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TPM1P09493 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
TPM1P09493 AC092053.2-201ENST00000640557 1818 ntBASIC24.29■■□□□ 1.48
TPM1P09493 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
TPM1P09493 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC24.29■■□□□ 1.48
TPM1P09493 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
TPM1P09493 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC24.29■■□□□ 1.48
TPM1P09493 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
TPM1P09493 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.28■■□□□ 1.48
TPM1P09493 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.28■■□□□ 1.48
TPM1P09493 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.28■■□□□ 1.48
TPM1P09493 THA1P-201ENST00000590384 1145 ntBASIC24.28■■□□□ 1.48
TPM1P09493 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TPM1P09493 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
TPM1P09493 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
TPM1P09493 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.27■■□□□ 1.48
TPM1P09493 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
TPM1P09493 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
TPM1P09493 AF131216.4-201ENST00000638924 1588 ntBASIC24.27■■□□□ 1.48
TPM1P09493 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
TPM1P09493 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC24.27■■□□□ 1.48
TPM1P09493 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.27■■□□□ 1.48
TPM1P09493 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.27■■□□□ 1.48
TPM1P09493 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.27■■□□□ 1.48
TPM1P09493 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TPM1P09493 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
TPM1P09493 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TPM1P09493 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.26■■□□□ 1.47
TPM1P09493 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TPM1P09493 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.26■■□□□ 1.47
TPM1P09493 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.26■■□□□ 1.47
TPM1P09493 BHLHE23-202ENST00000612929 1109 ntBASIC24.26■■□□□ 1.47
TPM1P09493 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TPM1P09493 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
TPM1P09493 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
TPM1P09493 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
TPM1P09493 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.25■■□□□ 1.47
TPM1P09493 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.25■■□□□ 1.47
TPM1P09493 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.25■■□□□ 1.47
TPM1P09493 DUX4L18-201ENST00000553347 1267 ntBASIC24.25■■□□□ 1.47
TPM1P09493 MIR4281-201ENST00000580852 62 ntBASIC24.25■■□□□ 1.47
TPM1P09493 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.25■■□□□ 1.47
TPM1P09493 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
TPM1P09493 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.25■■□□□ 1.47
TPM1P09493 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.25■■□□□ 1.47
TPM1P09493 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
TPM1P09493 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TPM1P09493 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
TPM1P09493 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
TPM1P09493 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
TPM1P09493 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC24.24■■□□□ 1.47
TPM1P09493 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
TPM1P09493 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.24■■□□□ 1.47
TPM1P09493 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TPM1P09493 KRT18P24-201ENST00000344739 1156 ntBASIC24.24■■□□□ 1.47
TPM1P09493 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
TPM1P09493 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.24■■□□□ 1.47
TPM1P09493 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
TPM1P09493 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
TPM1P09493 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TPM1P09493 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.24■■□□□ 1.47
TPM1P09493 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
TPM1P09493 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
TPM1P09493 C11orf96-202ENST00000528572 1834 ntBASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms