Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
HMGB1P09429 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.16■■□□□ 1.78
HMGB1P09429 SRD5A1P1-201ENST00000442297 786 ntBASIC26.16■■□□□ 1.78
HMGB1P09429 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
HMGB1P09429 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.16■■□□□ 1.78
HMGB1P09429 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGB1P09429 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.16■■□□□ 1.78
HMGB1P09429 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGB1P09429 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
HMGB1P09429 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.15■■□□□ 1.78
HMGB1P09429 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
HMGB1P09429 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
HMGB1P09429 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC26.15■■□□□ 1.78
HMGB1P09429 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HMGB1P09429 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.14■■□□□ 1.78
HMGB1P09429 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
HMGB1P09429 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.14■■□□□ 1.78
HMGB1P09429 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.14■■□□□ 1.78
HMGB1P09429 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
HMGB1P09429 AC092171.4-201ENST00000609130 632 ntBASIC26.14■■□□□ 1.78
HMGB1P09429 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.14■■□□□ 1.78
HMGB1P09429 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
HMGB1P09429 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC26.14■■□□□ 1.77
HMGB1P09429 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
HMGB1P09429 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 AC099791.2-201ENST00000605725 427 ntBASIC26.13■■□□□ 1.77
HMGB1P09429 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.13■■□□□ 1.77
HMGB1P09429 AL117328.2-201ENST00000624617 1940 ntBASIC26.13■■□□□ 1.77
HMGB1P09429 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HMGB1P09429 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.12■■□□□ 1.77
HMGB1P09429 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
HMGB1P09429 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.12■■□□□ 1.77
HMGB1P09429 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.12■■□□□ 1.77
HMGB1P09429 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.12■■□□□ 1.77
HMGB1P09429 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.12■■□□□ 1.77
HMGB1P09429 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.12■■□□□ 1.77
HMGB1P09429 AC004687.1-201ENST00000579003 1625 ntBASIC26.12■■□□□ 1.77
HMGB1P09429 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 AC127496.7-201ENST00000625110 1798 ntBASIC26.12■■□□□ 1.77
HMGB1P09429 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HMGB1P09429 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.11■■□□□ 1.77
HMGB1P09429 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
HMGB1P09429 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HMGB1P09429 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
HMGB1P09429 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGB1P09429 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.1■■□□□ 1.77
HMGB1P09429 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGB1P09429 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGB1P09429 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HMGB1P09429 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC26.09■■□□□ 1.77
HMGB1P09429 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.09■■□□□ 1.77
HMGB1P09429 AC006455.2-201ENST00000429931 906 ntBASIC26.09■■□□□ 1.77
HMGB1P09429 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
HMGB1P09429 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.09■■□□□ 1.77
HMGB1P09429 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
HMGB1P09429 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
HMGB1P09429 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 AC087742.1-201ENST00000575880 1738 ntBASIC26.08■■□□□ 1.77
HMGB1P09429 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
HMGB1P09429 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.08■■□□□ 1.77
HMGB1P09429 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.08■■□□□ 1.77
HMGB1P09429 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
HMGB1P09429 GUSBP5-202ENST00000510805 1989 ntBASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms