Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.36■■□□□ 1.49
CHRNA1P02708 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CHRNA1P02708 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CHRNA1P02708 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CHRNA1P02708 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CHRNA1P02708 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CHRNA1P02708 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CHRNA1P02708 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.35■■□□□ 1.49
CHRNA1P02708 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.35■■□□□ 1.49
CHRNA1P02708 LINC00543-201ENST00000567234 1845 ntBASIC24.35■■□□□ 1.49
CHRNA1P02708 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.35■■□□□ 1.49
CHRNA1P02708 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.35■■□□□ 1.49
CHRNA1P02708 AC105233.4-201ENST00000642045 216 ntBASIC24.35■■□□□ 1.49
CHRNA1P02708 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.35■■□□□ 1.49
CHRNA1P02708 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CHRNA1P02708 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CHRNA1P02708 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
CHRNA1P02708 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CHRNA1P02708 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CHRNA1P02708 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.34■■□□□ 1.49
CHRNA1P02708 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CHRNA1P02708 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.34■■□□□ 1.49
CHRNA1P02708 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CHRNA1P02708 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CHRNA1P02708 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CHRNA1P02708 AC004812.2-201ENST00000611079 2094 ntBASIC24.33■■□□□ 1.49
CHRNA1P02708 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CHRNA1P02708 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.33■■□□□ 1.49
CHRNA1P02708 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CHRNA1P02708 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CHRNA1P02708 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CHRNA1P02708 LINC01124-201ENST00000409786 2117 ntBASIC24.33■■□□□ 1.49
CHRNA1P02708 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CHRNA1P02708 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CHRNA1P02708 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.33■■□□□ 1.48
CHRNA1P02708 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CHRNA1P02708 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CHRNA1P02708 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.32■■□□□ 1.48
CHRNA1P02708 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.32■■□□□ 1.48
CHRNA1P02708 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.32■■□□□ 1.48
CHRNA1P02708 AC004911.1-201ENST00000416316 871 ntBASIC24.32■■□□□ 1.48
CHRNA1P02708 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.32■■□□□ 1.48
CHRNA1P02708 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CHRNA1P02708 AC079630.1-202ENST00000618127 1840 ntBASIC24.32■■□□□ 1.48
CHRNA1P02708 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
CHRNA1P02708 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.32■■□□□ 1.48
CHRNA1P02708 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
CHRNA1P02708 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.31■■□□□ 1.48
CHRNA1P02708 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.31■■□□□ 1.48
CHRNA1P02708 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CHRNA1P02708 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CHRNA1P02708 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.3■■□□□ 1.48
CHRNA1P02708 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.3■■□□□ 1.48
CHRNA1P02708 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.3■■□□□ 1.48
CHRNA1P02708 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.3■■□□□ 1.48
CHRNA1P02708 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.3■■□□□ 1.48
CHRNA1P02708 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CHRNA1P02708 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.3■■□□□ 1.48
CHRNA1P02708 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.29■■□□□ 1.48
CHRNA1P02708 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.29■■□□□ 1.48
CHRNA1P02708 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.29■■□□□ 1.48
CHRNA1P02708 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.29■■□□□ 1.48
CHRNA1P02708 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.29■■□□□ 1.48
CHRNA1P02708 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
CHRNA1P02708 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.29■■□□□ 1.48
CHRNA1P02708 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.29■■□□□ 1.48
CHRNA1P02708 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.29■■□□□ 1.48
CHRNA1P02708 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.29■■□□□ 1.48
CHRNA1P02708 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.29■■□□□ 1.48
CHRNA1P02708 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CHRNA1P02708 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.29■■□□□ 1.48
CHRNA1P02708 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CHRNA1P02708 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.29■■□□□ 1.48
CHRNA1P02708 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
CHRNA1P02708 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CHRNA1P02708 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms