Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MIR4281-201ENST00000580852 62 ntBASIC21.27■■□□□ 1
LDLRP01130 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.27■■□□□ 1
LDLRP01130 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.27■■□□□ 1
LDLRP01130 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LDLRP01130 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LDLRP01130 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LDLRP01130 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
LDLRP01130 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDLRP01130 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDLRP01130 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDLRP01130 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDLRP01130 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDLRP01130 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
LDLRP01130 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.26■□□□□ 0.99
LDLRP01130 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.26■□□□□ 0.99
LDLRP01130 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.25■□□□□ 0.99
LDLRP01130 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.25■□□□□ 0.99
LDLRP01130 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
LDLRP01130 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 AC026271.2-201ENST00000428091 497 ntBASIC21.25■□□□□ 0.99
LDLRP01130 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.25■□□□□ 0.99
LDLRP01130 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDLRP01130 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.24■□□□□ 0.99
LDLRP01130 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDLRP01130 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.24■□□□□ 0.99
LDLRP01130 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDLRP01130 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDLRP01130 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
LDLRP01130 AC104564.3-201ENST00000582367 638 ntBASIC21.24■□□□□ 0.99
LDLRP01130 AL512631.2-201ENST00000604634 923 ntBASIC21.24■□□□□ 0.99
LDLRP01130 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDLRP01130 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDLRP01130 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.24■□□□□ 0.99
LDLRP01130 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
LDLRP01130 AL161729.1-201ENST00000604104 1402 ntBASIC21.23■□□□□ 0.99
LDLRP01130 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDLRP01130 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LDLRP01130 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDLRP01130 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.23■□□□□ 0.99
LDLRP01130 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.23■□□□□ 0.99
LDLRP01130 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
LDLRP01130 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.23■□□□□ 0.99
LDLRP01130 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.23■□□□□ 0.99
LDLRP01130 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDLRP01130 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.22■□□□□ 0.99
LDLRP01130 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
LDLRP01130 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.22■□□□□ 0.99
LDLRP01130 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.22■□□□□ 0.99
LDLRP01130 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDLRP01130 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.21■□□□□ 0.99
LDLRP01130 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 AC007375.3-201ENST00000600936 2314 ntBASIC21.21■□□□□ 0.99
LDLRP01130 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.21■□□□□ 0.99
LDLRP01130 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.21■□□□□ 0.99
LDLRP01130 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.21■□□□□ 0.99
LDLRP01130 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.21■□□□□ 0.99
LDLRP01130 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.21■□□□□ 0.99
LDLRP01130 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.21■□□□□ 0.99
LDLRP01130 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDLRP01130 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.2■□□□□ 0.98
LDLRP01130 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDLRP01130 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDLRP01130 AC106739.1-201ENST00000617035 715 ntBASIC21.2■□□□□ 0.98
LDLRP01130 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDLRP01130 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.2■□□□□ 0.98
LDLRP01130 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDLRP01130 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.2■□□□□ 0.98
LDLRP01130 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LDLRP01130 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LDLRP01130 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
LDLRP01130 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
LDLRP01130 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms